Pathways Knowlegdes

Biological pathway database

Pathway DOIs Note
isoleucine degradation I

Accession ID: BioCyc:TRYPANO_ILEUDEG-PWY		 -
isoleucine biosynthesis I

Accession ID: BioCyc:TRYPANO_PWY-3001		 -
isoleucine biosynthesis I (from threonine)

Accession ID: BioCyc:TRYPANO_ILEUSYN-PWY		 -
superpathway of threonine metabolism

Accession ID: BioCyc:TRYPANO_THREOCAT-PWY		 -
tRNA Charging

Accession ID: PathBank:SMP0000820		 -
tRNA Charging 2

Accession ID: PathBank:SMP0000824		 -
Isoleucine Biosynthesis

Accession ID: PathBank:SMP0000838		 -
Biochemical pathways: part I

Accession ID: WikiPathways:WP3604
  • 10.1016/s0303-2647(98)00019-7
 Michal G. On representation of metabolic pathways. Biosystems. 1998 Jun;47(1-2):1–7. doi: 10.1016/s0303-2647(98)00019-7. PMID: 9715748.
mRNA, protein, and metabolite inducation pathway by cyclosporin A

Accession ID: WikiPathways:WP3953
  • 10.1016/j.jprot.2012.11.022
 Wilmes A, Limonciel A, Aschauer L, Moenks K, Bielow C, Leonard MO, Hamon J, Carpi D, Ruzek S, Handler A, Schmal O, Herrgen K, Bellwon P, Burek C, Truisi GL, Hewitt P, Di Consiglio E, Testai E, Blaauboer BJ, Guillou C, Huber CG, Lukas A, Pfaller W, Mueller SO, Bois FY, Dekant W, Jennings P. Application of integrated transcriptomic, proteomic and metabolomic profiling for the delineation of mechanisms of drug induced cell stress. J Proteomics. 2013 Feb 21;79():180–94. doi: 10.1016/j.jprot.2012.11.022. PMID: 23238060.
AtMetExpress overview

Accession ID: WikiPathways:WP3622
  • 10.1039/c4np00072b
 Sumner LW, Lei Z, Nikolau BJ, Saito K. Modern plant metabolomics: advanced natural product gene discoveries, improved technologies, and future prospects. Nat Prod Rep. 2015 Feb;32(2):212–29. doi: 10.1039/c4np00072b. PMID: 25342293.
Glucosinolate biosynthesis from branched-chain amino acid

Accession ID: WikiPathways:WP4599
  • 10.1199/tab.0134
 Wittstock U, Burow M. Glucosinolate breakdown in Arabidopsis: mechanism, regulation and biological significance. Arabidopsis Book. 2010;8():e0134. PMID: 22303260; PMCID: PMC3244901.
Leucine, isoleucine and valine metabolism

Accession ID: WikiPathways:WP4686		 -
Amino acid metabolism

Accession ID: WikiPathways:WP662		 -
Glucose homeostasis

Accession ID: WikiPathways:WP661
  • 10.1038/msb.2008.50
 Shaham O, Wei R, Wang TJ, Ricciardi C, Lewis GD, Vasan RS, Carr SA, Thadhani R, Gerszten RE, Mootha VK. Metabolic profiling of the human response to a glucose challenge reveals distinct axes of insulin sensitivity. Molecular Systems Biology. 2008 Jan;4(1). doi: 10.1038/msb.2008.50.
Valine, leucine and isoleucine degradation

Accession ID: WikiPathways:WP1451		 -
Amino acid metabolism

Accession ID: WikiPathways:WP3925		 -
3-Methylcrotonyl-CoA Carboxylase Deficiency Type I

Accession ID: PathBank:SMP0120662		 -
3-Hydroxyisobutyric Aciduria

Accession ID: PathBank:SMP0120806		 -
3-Hydroxy-3-methylglutaryl-CoA Lyase Deficiency

Accession ID: PathBank:SMP0120440		 -
3-Methylglutaconic Aciduria Type IV

Accession ID: PathBank:SMP0120444		 -