Avibacterium

ncbi_taxid: 292486 - Avibacterium(genus); all_childs: 728, 751, 755, 762, 380674, 1936168, 2685287

taxonomy name: Avibacterium (genus)
chinese name:
ancestor: Pasteurellaceae (family)
ncbi taxonomy: 292486
GTDB taxonomy:

Organism Phenotype Traits

Trait Unit Trait Value Ontology Terms
[Environmental preferences/Atmosphere] aerotolerant boolean true MICRO:0000502
[Environmental preferences/Atmosphere] capnophilic boolean true SNOMED:413748004
[Environmental preferences/Atmosphere] facultative anaerobe boolean true OMP:0000087
[Environmental preferences/Atmosphere] oxygen preference factor microaerophilic MICRO:0000491
[Environmental preferences/pH] pH growth pH 7.54 (7.2718205 ~ 8.007218) OMP:0005008
[Environmental preferences/pH] pH maximum pH 9.34 (9.005499 ~ 9.78636) OMP:0005008
[Environmental preferences/pH] pH minimum pH 5.4 (5.182281 ~ 5.7461433) OMP:0005008
[Environmental preferences/Salinity] salinity growth % NaCl (w/v) 1.98 (0.429691 ~ 2.6983364) OMP:0005013
[Environmental preferences/Salinity] salinity maximum % NaCl (w/v) 5.68 (2.7361796 ~ 6.6553264) OMP:0005013
[Environmental preferences/Salinity] salinity minimum % NaCl (w/v) 0 (0 ~ 0.056127086) OMP:0005013
[Environmental preferences/Temperature] temperature growth Celsius 33.2 (30.34769 ~ 37) OMP:0005002
[Environmental preferences/Temperature] temperature maximum Celsius 41.13 (37 ~ 45.815773) OMP:0005002
[Environmental preferences/Temperature] temperature minimum Celsius 16.14 (14.142589 ~ 30) OMP:0005002
[Enzymes/Enzyme activity] enzyme activity: acid phosphatase (EC3.1.3.2) boolean true SNOMED:424017009, EC3.1.3.2
[Enzymes/Enzyme activity] enzyme activity: alkaline phosphatase (EC3.1.3.1) boolean true SNOMED:424017009, EC3.1.3.1
[Enzymes/Enzyme activity] enzyme activity: alpha-glucosidase (EC3.2.1.20) boolean No robust majority SNOMED:424017009, EC3.2.1.20
[Enzymes/Enzyme activity] enzyme activity: beta-galactosidase (EC3.2.1.23) boolean No robust majority SNOMED:424017009, EC3.2.1.23
[Enzymes/Enzyme activity] enzyme activity: beta-lactamase (EC3.5.2.6) boolean No robust majority SNOMED:424017009, EC3.5.2.6
[Enzymes/Enzyme activity] enzyme activity: catalase (EC1.11.1.6) boolean true SNOMED:424017009, EC1.11.1.6
[Enzymes/Enzyme activity] enzyme activity: cytochrome oxidase (EC1.9.3.1) boolean true SNOMED:424017009, EC1.9.3.1
[Enzymes/Enzyme activity] enzyme activity: ornithine decarboxylase (EC4.1.1.17) boolean true SNOMED:424017009, EC4.1.1.17
[Enzymes/Enzyme activity] enzyme activity: oxidase boolean true SNOMED:424017009
[Enzymes/Enzyme activity] enzyme activity: urease (EC3.5.1.5) boolean No robust majority SNOMED:424017009, EC3.5.1.5
[Genome/Composition] coding density % 88.13 (86.88 ~ 88.81) SIO:001276, mesh:D059646, SNOMED:258755000
[Genome/Composition] GC percentage % 40.98 (40.8 ~ 41.6) mesh:D001482
View All Phenotype Traits

Taxonomy Lineage

Child Taxonomy

taxonomy name rank note
Avibacterium paragallinarum species ncbi_taxid: 728 - Avibacterium paragallinarum(species); all_childs: 948565, 1001223, 1001224, 1071401, 1071402, 1071403, 1071404, 1278971, 1351754, 1441729
Avibacterium avium species ncbi_taxid: 751 - Avibacterium avium(species); all_childs:
Avibacterium gallinarum species ncbi_taxid: 755 - Avibacterium gallinarum(species); all_childs:
Avibacterium volantium species ncbi_taxid: 762 - Avibacterium volantium(species); all_childs:
Avibacterium endocarditidis species ncbi_taxid: 380674 - Avibacterium endocarditidis(species); all_childs:
environmental samples no rank ncbi_taxid: 1936168 - environmental samples(no rank); all_childs: 1936169
unclassified Avibacterium no rank ncbi_taxid: 2685287 - unclassified Avibacterium(no rank); all_childs: 409978, 572025, 572026, 572027, 572028, 572029, 572030, 572031, 860907, 860909, 1184165, 1184166, 1184167, 1184169, 1184170, 1184171, 1184172, 1872665, 2911523, 2911524, 2911525, 2911526, 2911527, 2911528, 2911534, 2911535

Enzyme Proteins

protein id name ec_number function

Metabolites Taxonomy Source

Creating taxonomically-informed metabolome libraries