Avibacterium volantium

ncbi_taxid: 762 - Avibacterium volantium(species); all_childs:

taxonomy name: Avibacterium volantium (species)
chinese name:
ancestor: Avibacterium (genus)
ncbi taxonomy: 762
GTDB taxonomy: 735177150

Organism Phenotype Traits

Trait Unit Trait Value Ontology Terms
[Environmental preferences/Atmosphere] aerotolerant boolean true MICRO:0000502
[Environmental preferences/Atmosphere] capnophilic boolean true SNOMED:413748004
[Environmental preferences/Atmosphere] facultative anaerobe boolean true OMP:0000087
[Environmental preferences/Atmosphere] oxygen preference factor microaerophilic MICRO:0000491
[Environmental preferences/pH] pH growth pH 7.79 (7.751592 ~ 7.8319573) OMP:0005008
[Environmental preferences/pH] pH maximum pH 9.58 (9.560336 ~ 9.598051) OMP:0005008
[Environmental preferences/pH] pH minimum pH 5.52 (5.446084 ~ 5.5839868) OMP:0005008
[Environmental preferences/Salinity] salinity growth % NaCl (w/v) 1.67 (1.2723783 ~ 2.0772302) OMP:0005013
[Environmental preferences/Salinity] salinity maximum % NaCl (w/v) 5.14 (4.8437023 ~ 5.4288177) OMP:0005013
[Environmental preferences/Salinity] salinity minimum % NaCl (w/v) OMP:0005013
[Environmental preferences/Temperature] temperature growth Celsius 37 OMP:0005002
[Environmental preferences/Temperature] temperature maximum Celsius 37 OMP:0005002
[Environmental preferences/Temperature] temperature minimum Celsius 25 OMP:0005002
[Enzymes/Enzyme activity] enzyme activity: acid phosphatase (EC3.1.3.2) boolean true SNOMED:424017009, EC3.1.3.2
[Enzymes/Enzyme activity] enzyme activity: alkaline phosphatase (EC3.1.3.1) boolean true SNOMED:424017009, EC3.1.3.1
[Enzymes/Enzyme activity] enzyme activity: alpha-glucosidase (EC3.2.1.20) boolean true SNOMED:424017009, EC3.2.1.20
[Enzymes/Enzyme activity] enzyme activity: beta-galactosidase (EC3.2.1.23) boolean No robust majority SNOMED:424017009, EC3.2.1.23
[Enzymes/Enzyme activity] enzyme activity: beta-lactamase (EC3.5.2.6) boolean true SNOMED:424017009, EC3.5.2.6
[Enzymes/Enzyme activity] enzyme activity: catalase (EC1.11.1.6) boolean true SNOMED:424017009, EC1.11.1.6
[Enzymes/Enzyme activity] enzyme activity: oxidase boolean true SNOMED:424017009
[Genome/Composition] coding density % 88.27 SIO:001276, mesh:D059646, SNOMED:258755000
[Genome/Composition] GC percentage % 41.5 mesh:D001482
[Genome/Gene content] estimated gene count genes 2090.8 (2084 ~ 2097.6) OBI:0002568, gene, NCIT:C25498
[Genome/Gene content] gene count genes 2090.5 (2084 ~ 2097) OBI:0002568, gene
[Genome/Genome size] estimated genome size bp 2215172.5 (2199869 ~ 2230476) GENEPIO:0001561
View All Phenotype Traits

Taxonomy Lineage

Child Taxonomy

taxonomy name rank note

Enzyme Proteins

protein id name ec_number function
P25282 [UniProt] hgaIAM 2.1.1.37 Type II methyltransferase M1.HgaI
P25283 [UniProt] hgaIBM 2.1.1.37 Type II methyltransferase M2.HgaI
P43418 [UniProt] hgaIR 3.1.21.4 Type II restriction enzyme HgaI

Metabolites Taxonomy Source

Creating taxonomically-informed metabolome libraries