Avibacterium avium

ncbi_taxid: 751 - Avibacterium avium(species); all_childs:

taxonomy name: Avibacterium avium (species)
chinese name:
ancestor: Avibacterium (genus)
ncbi taxonomy: 751
GTDB taxonomy: 1818838042

Organism Phenotype Traits

Trait Unit Trait Value Ontology Terms
[Environmental preferences/Atmosphere] aerotolerant boolean true MICRO:0000502
[Environmental preferences/Atmosphere] oxygen preference factor microaerophilic MICRO:0000491
[Environmental preferences/pH] pH growth pH 7.63 OMP:0005008
[Environmental preferences/pH] pH maximum pH 9.38 OMP:0005008
[Environmental preferences/pH] pH minimum pH 5.35 OMP:0005008
[Environmental preferences/Salinity] salinity growth % NaCl (w/v) 2.26 OMP:0005013
[Environmental preferences/Salinity] salinity maximum % NaCl (w/v) 6.02 OMP:0005013
[Environmental preferences/Salinity] salinity minimum % NaCl (w/v) 0.06 OMP:0005013
[Environmental preferences/Temperature] temperature growth Celsius 37 OMP:0005002
[Environmental preferences/Temperature] temperature maximum Celsius 45.82 OMP:0005002
[Environmental preferences/Temperature] temperature minimum Celsius 18.8 OMP:0005002
[Enzymes/Enzyme activity] enzyme activity: acid phosphatase (EC3.1.3.2) boolean true SNOMED:424017009, EC3.1.3.2
[Enzymes/Enzyme activity] enzyme activity: alkaline phosphatase (EC3.1.3.1) boolean true SNOMED:424017009, EC3.1.3.1
[Enzymes/Enzyme activity] enzyme activity: alpha-glucosidase (EC3.2.1.20) boolean true SNOMED:424017009, EC3.2.1.20
[Genome/Composition] coding density % 88.03 SIO:001276, mesh:D059646, SNOMED:258755000
[Genome/Composition] GC percentage % 41.6 mesh:D001482
[Genome/Gene content] estimated gene count genes 2035 OBI:0002568, gene, NCIT:C25498
[Genome/Gene content] gene count genes 2035 OBI:0002568, gene
[Genome/Genome size] estimated genome size bp 2205360 GENEPIO:0001561
[Genome/Genome size] info:genome size bp 2205360 GENEPIO:0001561
[Metabolism/Builds acid from] builds acid from: D-fructose boolean true GO:0016053, CHEBI:15824
[Metabolism/Builds acid from] builds acid from: D-glucose boolean true GO:0016053, CHEBI:17634
[Metabolism/Builds acid from] builds acid from: sucrose boolean true GO:0016053, CHEBI:17992
[Metabolism/Reduction] reduction: nitrate boolean true GO:0055114, CHEBI:17632
[Metabolites/Metabolite tests] presence of hemolysis factor gamma OMP:0005117
View All Phenotype Traits

Taxonomy Lineage

Child Taxonomy

taxonomy name rank note

Enzyme Proteins

protein id name ec_number function

Metabolites Taxonomy Source

Creating taxonomically-informed metabolome libraries