Atopobacter phocae

ncbi_taxid: 136492 - Atopobacter phocae(species); all_childs: 1336234

taxonomy name: Atopobacter phocae (species)
chinese name:
ancestor: Atopobacter (genus)
ncbi taxonomy: 136492
GTDB taxonomy: 860873366

Organism Phenotype Traits

Trait Unit Trait Value Ontology Terms
[Environmental preferences/Atmosphere] aerotolerant boolean true MICRO:0000502
[Environmental preferences/Atmosphere] capnophilic boolean true SNOMED:413748004
[Environmental preferences/Atmosphere] facultative anaerobe boolean true OMP:0000087
[Environmental preferences/Atmosphere] oxygen preference factor microaerophilic MICRO:0000491
[Environmental preferences/pH] pH growth pH 8.5 OMP:0005008
[Environmental preferences/pH] pH maximum pH 9.5 OMP:0005008
[Environmental preferences/pH] pH minimum pH 6.27 OMP:0005008
[Environmental preferences/Salinity] salinity growth % NaCl (w/v) 4.18 OMP:0005013
[Environmental preferences/Salinity] salinity maximum % NaCl (w/v) 7.14 OMP:0005013
[Environmental preferences/Salinity] salinity minimum % NaCl (w/v) 1.63 OMP:0005013
[Environmental preferences/Temperature] temperature growth Celsius 37 OMP:0005002
[Environmental preferences/Temperature] temperature maximum Celsius 41 OMP:0005002
[Environmental preferences/Temperature] temperature minimum Celsius 25 OMP:0005002
[Enzymes/Enzyme activity] enzyme activity: acid phosphatase (EC3.1.3.2) boolean true SNOMED:424017009, EC3.1.3.2
[Enzymes/Enzyme activity] enzyme activity: Alanyl-Phenylalanyl-Proline arylamidase boolean No robust majority SNOMED:424017009
[Enzymes/Enzyme activity] enzyme activity: alcohol dehydrogenase (EC1.1.1.1) boolean true SNOMED:424017009, EC1.1.1.1
[Enzymes/Enzyme activity] enzyme activity: alkaline phosphatase (EC3.1.3.1) boolean No robust majority SNOMED:424017009, EC3.1.3.1
[Enzymes/Enzyme activity] enzyme activity: alpha-glucosidase (EC3.2.1.20) boolean No robust majority SNOMED:424017009, EC3.2.1.20
[Enzymes/Enzyme activity] enzyme activity: arginine dihydrolase (EC3.5.3.6) boolean true SNOMED:424017009, EC3.5.3.6
[Enzymes/Enzyme activity] enzyme activity: beta-galactosidase (EC3.2.1.23) boolean No robust majority SNOMED:424017009, EC3.2.1.23
[Enzymes/Enzyme activity] enzyme activity: coagulase boolean true SNOMED:424017009
[Enzymes/Enzyme activity] enzyme activity: pyrrolidonyl arylamidase (EC3.4.19.3) boolean true SNOMED:424017009, EC3.4.19.3
[Genome/Composition] coding density % 88.45 SIO:001276, mesh:D059646, SNOMED:258755000
[Genome/Composition] GC percentage % 34.6 mesh:D001482
[Genome/Gene content] estimated gene count genes 1650.3 OBI:0002568, gene, NCIT:C25498
View All Phenotype Traits

Taxonomy Lineage

Child Taxonomy

taxonomy name rank note
Atopobacter phocae ATCC BAA-285 strain ncbi_taxid: 1336234 - Atopobacter phocae ATCC BAA-285(strain); all_childs:

Enzyme Proteins

protein id name ec_number function

Metabolites Taxonomy Source

Creating taxonomically-informed metabolome libraries