Atopobacter

ncbi_taxid: 136491 - Atopobacter(genus); all_childs: 136492, 1872674, 2649111

taxonomy name: Atopobacter (genus)
chinese name:
ancestor: Carnobacteriaceae (family)
ncbi taxonomy: 136491
GTDB taxonomy:

Organism Phenotype Traits

Trait Unit Trait Value Ontology Terms
[Environmental preferences/Atmosphere] aerotolerant boolean true MICRO:0000502
[Environmental preferences/Atmosphere] capnophilic boolean No robust majority SNOMED:413748004
[Environmental preferences/Atmosphere] facultative anaerobe boolean true OMP:0000087
[Environmental preferences/Atmosphere] oxygen preference factor microaerophilic MICRO:0000491
[Environmental preferences/pH] pH growth pH 8.43 (8.355056 ~ 8.503288) OMP:0005008
[Environmental preferences/pH] pH maximum pH 9.58 (9.501162 ~ 9.660984) OMP:0005008
[Environmental preferences/pH] pH minimum pH 6.17 (6.0597787 ~ 6.273967) OMP:0005008
[Environmental preferences/Salinity] salinity growth % NaCl (w/v) 4.35 (4.1757784 ~ 4.515323) OMP:0005013
[Environmental preferences/Salinity] salinity maximum % NaCl (w/v) 6.88 (6.612916 ~ 7.1383657) OMP:0005013
[Environmental preferences/Salinity] salinity minimum % NaCl (w/v) 2.64 (1.6296194 ~ 3.65975) OMP:0005013
[Environmental preferences/Temperature] temperature growth Celsius 37.71 (35.977478 ~ 40.848522) OMP:0005002
[Environmental preferences/Temperature] temperature maximum Celsius 46.6 (41 ~ 53.089165) OMP:0005002
[Environmental preferences/Temperature] temperature minimum Celsius 27.33 (25 ~ 30.916288) OMP:0005002
[Enzymes/Enzyme activity] enzyme activity: acid phosphatase (EC3.1.3.2) boolean true SNOMED:424017009, EC3.1.3.2
[Enzymes/Enzyme activity] enzyme activity: Alanyl-Phenylalanyl-Proline arylamidase boolean No robust majority SNOMED:424017009
[Enzymes/Enzyme activity] enzyme activity: alcohol dehydrogenase (EC1.1.1.1) boolean true SNOMED:424017009, EC1.1.1.1
[Enzymes/Enzyme activity] enzyme activity: alkaline phosphatase (EC3.1.3.1) boolean No robust majority SNOMED:424017009, EC3.1.3.1
[Enzymes/Enzyme activity] enzyme activity: alpha-glucosidase (EC3.2.1.20) boolean No robust majority SNOMED:424017009, EC3.2.1.20
[Enzymes/Enzyme activity] enzyme activity: arginine dihydrolase (EC3.5.3.6) boolean true SNOMED:424017009, EC3.5.3.6
[Enzymes/Enzyme activity] enzyme activity: beta-galactosidase (EC3.2.1.23) boolean No robust majority SNOMED:424017009, EC3.2.1.23
[Enzymes/Enzyme activity] enzyme activity: coagulase boolean true SNOMED:424017009
[Enzymes/Enzyme activity] enzyme activity: pyrrolidonyl arylamidase (EC3.4.19.3) boolean true SNOMED:424017009, EC3.4.19.3
[Genome/Composition] coding density % 86.12 (83.79 ~ 88.45) SIO:001276, mesh:D059646, SNOMED:258755000
[Genome/Composition] GC percentage % 36.6 (34.6 ~ 38.6) mesh:D001482
[Genome/Gene content] estimated gene count genes 1804.65 (1650.3 ~ 1959) OBI:0002568, gene, NCIT:C25498
View All Phenotype Traits

Taxonomy Lineage

Child Taxonomy

taxonomy name rank note
Atopobacter phocae species ncbi_taxid: 136492 - Atopobacter phocae(species); all_childs: 1336234
environmental samples no rank ncbi_taxid: 1872674 - environmental samples(no rank); all_childs: 1872675
unclassified Atopobacter no rank ncbi_taxid: 2649111 - unclassified Atopobacter(no rank); all_childs: 1872649, 2315861

Enzyme Proteins

protein id name ec_number function

Metabolites Taxonomy Source

Creating taxonomically-informed metabolome libraries