Pathways Knowlegdes
Biological pathway database
| Pathway | DOIs | Note |
|---|---|---|
| purine nucleobases degradation I (anaerobic) Accession ID: BioCyc:PDIF272563_P164-PWY |
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| urate biosynthesis/inosine 5'-phosphate degradation Accession ID: BioCyc:BTHE_PWY-5695 |
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| guanosine nucleotides degradation III Accession ID: BioCyc:GCF_000013425_PWY-6608 |
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| theophylline degradation Accession ID: BioCyc:META_PWY-6999 |
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Summers RM, Louie TM, Yu C, Gakhar L, Louie KC, Subramanian M. Novel, Highly Specific N -Demethylases Enable Bacteria To Live on Caffeine and Related Purine Alkaloids. J Bacteriol. 2012 Apr 15;194(8):2041–9. doi: 10.1128/jb.06637-11.; Summers RM, Louie TM, Yu CL, Subramanian M. Characterization of a broad-specificity non-haem iron N-demethylase from Pseudomonas putida CBB5 capable of utilizing several purine alkaloids as sole carbon and nitrogen source. Microbiology (Reading). 2011 Feb;157(Pt 2):583–92. doi: 10.1099/mic.0.043612-0. PMID: 20966097.; Yu CL, Louie TM, Summers R, Kale Y, Gopishetty S, Subramanian M. Two Distinct Pathways for Metabolism of Theophylline and Caffeine Are Coexpressed in Pseudomonas putida CBB5. J Bacteriol. 2009 Jul 15;191(14):4624–32. doi: 10.1128/jb.00409-09. |
| adenosine nucleotides degradation I Accession ID: BioCyc:META_PWY-6596 |
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Hesberg C, Hänsch R, Mendel RR, Bittner F. Tandem orientation of duplicated xanthine dehydrogenase genes from Arabidopsis thaliana: differential gene expression and enzyme activities. J Biol Chem. 2004 Apr 02;279(14):13547–54. doi: 10.1074/jbc.m312929200. PMID: 14726515.; Capote-Maínez N, Sánchez F. Characterization of the common bean uricase II and its expression in organs other than nodules. Plant Physiol. 1997 Dec;115(4):1307–17. PMID: 9414545; PMCID: PMC158596. |
| purine ribonucleosides degradation Accession ID: BioCyc:META_PWY0-1296 |
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Stoychev G, Kierdaszuk B, Shugar D. Xanthosine and xanthine. Substrate properties with purine nucleoside phosphorylases, and relevance to other enzyme systems. Eur J Biochem. 2002 Aug;269(16):4048–57. doi: 10.1046/j.1432-1033.2002.03097.x. PMID: 12180982.; Bzowska A, Kulikowska E, Shugar D. Purine nucleoside phosphorylases: properties, functions, and clinical aspects. Pharmacol Ther. 2000 Dec;88(3):349–425. doi: 10.1016/s0163-7258(00)00097-8. PMID: 11337031. |
| superpathway of purines degradation in plants Accession ID: BioCyc:META_P165-PWY |
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Pineda M, Piedras P, Cárdenas J. A continuous spectrophotometric assay for ureidoglycolase activity with lactate dehydrogenase or glyoxylate reductase as coupling enzyme. Anal Biochem. 1994 Nov 01;222(2):450–5. doi: 10.1006/abio.1994.1515. PMID: 7864371.; Pérez-Vecinte R, Alamillo JM, Cárdenas J, Pineda M. Purification and substrate inactivation of xanthine dehydrogenase from Chlamydomonasreinhardtii. Biochimica et Biophysica Acta (BBA) - General Subjects. 1992 Sep;1117(2):159–66. doi: 10.1016/0304-4165(92)90074-5. |
| salvage pathways of guanine, xanthine and their nucleosides Accession ID: BioCyc:YEAST_PWY3O-743 |
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Rolfes RJ. Regulation of purine nucleotide biosynthesis: in yeast and beyond. Biochem Soc Trans. 2006 Nov;34(Pt 5):786–90. doi: 10.1042/bst0340786. PMID: 17052198.; Saint-Marc C, Daignan-Fornier B. GUD1 (YDL238c) encodes Saccharomyces cerevisiae guanine deaminase, an enzyme expressed during post-diauxic growth. Yeast. 2004 Nov 24;21(16):1359–63. doi: 10.1002/yea.1186.; Lecoq K, Belloc I, Desgranges C, Daignan-Fornier B. Role of adenosine kinase in Saccharomyces cerevisiae: identification of the ADO1 gene and study of the mutant phenotypes. Yeast. 2001 Mar 15;18(4):335–42. doi: 10.1002/1097-0061(20010315)18:4<335::aid-yea674>3.0.co;2-x. PMID: 11223943.; Deeley MC. Adenine deaminase and adenine utilization in Saccharomyces cerevisiae. J Bacteriol. 1992 May;174(10):3102–10. doi: 10.1128/jb.174.10.3102-3110.1992. |
| adenosine nucleotides degradation I Accession ID: BioCyc:ARA_PWY-6596 |
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Hesberg C, Hänsch R, Mendel RR, Bittner F. Tandem orientation of duplicated xanthine dehydrogenase genes from Arabidopsis thaliana: differential gene expression and enzyme activities. J Biol Chem. 2004 Apr 02;279(14):13547–54. doi: 10.1074/jbc.m312929200. PMID: 14726515.; Capote-Maínez N, Sánchez F. Characterization of the common bean uricase II and its expression in organs other than nodules. Plant Physiol. 1997 Dec;115(4):1307–17. PMID: 9414545; PMCID: PMC158596. |
| purine ribonucleosides degradation Accession ID: BioCyc:VCHO_PWY0-1296 |
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| adenosine nucleotides degradation II Accession ID: BioCyc:SHIGELLA_SALVADEHYPOX-PWY |
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| xanthine and xanthosine salvage Accession ID: BioCyc:SHIGELLA_SALVPURINE2-PWY |
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| superpathway of guanosine nucleotides degradation (plants) Accession ID: BioCyc:PLASMO_PWY-6595 |
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| purine ribonucleosides degradation Accession ID: BioCyc:MTBH37RV_PWY0-1296 |
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| xanthine and xanthosine salvage Accession ID: BioCyc:MTBH37RV_SALVPURINE2-PWY |
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| urate biosynthesis/inosine 5'-phosphate degradation Accession ID: BioCyc:ECOL199310_PWY-5695 |
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| adenosine nucleotides degradation II Accession ID: BioCyc:ECOL199310_SALVADEHYPOX-PWY |
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| purine ribonucleosides degradation Accession ID: BioCyc:ANTHRA_PWY0-1296 |
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| purine ribonucleosides degradation Accession ID: BioCyc:AGRO_PWY0-1296 |
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| guanosine nucleotides degradation III Accession ID: BioCyc:AGRO_PWY-6608 |
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