Pathways Knowlegdes

Biological pathway database

Pathway DOIs Note
valine degradation I

Accession ID: BioCyc:THAPS_VALDEG-PWY		 -
inosine-5'-phosphate biosynthesis I

Accession ID: BioCyc:PDIF272563_PWY-6123		 -
L-arginine biosynthesis II (acetyl cycle)

Accession ID: BioCyc:PDIF272563_ARGSYNBSUB-PWY		 -
superpathway of histidine, purine and pyrimidine biosynthesis

Accession ID: BioCyc:CALBI_PRPP-PWY		 -
TCA cycle, aerobic respiration

Accession ID: BioCyc:CALBI_PWY3B3-100
  • 10.1016/s0021-9258(19)50315-5
  • 10.1074/jbc.272.50.31382
  • 10.1074/jbc.m304091200
  • 10.1128/jb.84.4.778-783.1962
 Yasutake Y, Watanabe S, Yao M, Takada Y, Fukunaga N, Tanaka I. Crystal Structure of the Monomeric Isocitrate Dehydrogenase in the Presence of NADP+. Journal of Biological Chemistry. 2003 Sep;278(38):36897–904. doi: 10.1074/jbc.m304091200.; Oyedotun KS, Lemire BD. The Carboxyl Terminus of the Saccharomyces cerevisiaeSuccinate Dehydrogenase Membrane Subunit, SDH4p, Is Necessary for Ubiquinone Reduction and Enzyme Stability. Journal of Biological Chemistry. 1997 Dec;272(50):31382–8. doi: 10.1074/jbc.272.50.31382.; Haselbeck RJ, McAlister-Henn L. Function and expression of yeast mitochondrial NAD- and NADP-specific isocitrate dehydrogenases. Journal of Biological Chemistry. 1993 Jun;268(16):12116–22. doi: 10.1016/s0021-9258(19)50315-5.; RAO GR, SIRSI M, RAMAKRISHNAN T. Enzymes in Candida albicans. II. Tricarboxylic acid cycle and related enzymes. J Bacteriol. 1962 Oct;84():778–83. PMID: 13973046; PMCID: PMC277958.
superpathway of pyrimidine ribonucleotides de novo biosynthesis

Accession ID: BioCyc:BTHE_PWY0-162		 -
UMP biosynthesis

Accession ID: BioCyc:BTHE_PWY-5686		 -
inosine-5'-phosphate biosynthesis I

Accession ID: BioCyc:CORYNE_PWY-6123		 -
superpathway of pyrimidine ribonucleotides de novo biosynthesis

Accession ID: BioCyc:CORYNE_PWY0-162		 -
N6-L-threonylcarbamoyladenosine37-modified tRNA biosynthesis

Accession ID: BioCyc:LACTORHA_PWY0-1587		 -
L-arginine biosynthesis I (via L-ornithine)

Accession ID: BioCyc:LACTORHA_ARGSYN-PWY		 -
L-valine degradation I

Accession ID: BioCyc:DESPIGER_VALDEG-PWY		 -
UMP biosynthesis I

Accession ID: BioCyc:DESPIGER_PWY-5686		 -
superpathway of pyrimidine ribonucleotides de novo biosynthesis

Accession ID: BioCyc:DESPIGER_PWY0-162		 -
N6-L-threonylcarbamoyladenosine37-modified tRNA biosynthesis

Accession ID: BioCyc:FAECPRAU_PWY0-1587		 -
L-arginine biosynthesis I (via L-ornithine)

Accession ID: BioCyc:FAECPRAU_ARGSYN-PWY		 -
UMP biosynthesis I

Accession ID: BioCyc:PRECOPRI_PWY-5686		 -
L-arginine biosynthesis I (via L-ornithine)

Accession ID: BioCyc:PRECOPRI_ARGSYN-PWY		 -
superpathway of pyrimidine ribonucleotides de novo biosynthesis

Accession ID: BioCyc:MSMI420247_PWY0-162		 -
incomplete reductive TCA cycle

Accession ID: BioCyc:MSMI420247_P42-PWY		 -