Pathways Knowlegdes
Biological pathway database
| Pathway | DOIs | Note |
|---|---|---|
| choline-O-sulfate degradation Accession ID: BioCyc:AGRO_P542-PWY |
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| glycine betaine biosynthesis I (Gram-negative bacteria) Accession ID: BioCyc:AURANTIMONAS_BETSYN-PWY |
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| superpathway of methionine degradation Accession ID: BioCyc:MOUSE_PWY-5328 |
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| methionine salvage II (mammalia) Accession ID: BioCyc:MOUSE_ADENOSYLHOMOCYSCAT-PWY |
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| glycine betaine degradation I Accession ID: BioCyc:SCO_PWY-3661 |
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| L-carnitine degradation II Accession ID: BioCyc:SCO_PWY-3602 |
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| glycine betaine biosynthesis I (Gram-negative bacteria) Accession ID: BioCyc:PCHR_BETSYN-PWY |
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| glycine betaine biosynthesis I (Gram-negative bacteria) Accession ID: BioCyc:ECOL316407_BETSYN-PWY |
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| glycine betaine biosynthesis I (Gram-negative bacteria) Accession ID: BioCyc:ECOL413997_BETSYN-PWY |
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| glycine betaine biosynthesis I (Gram-negative bacteria) Accession ID: BioCyc:THAPS_BETSYN-PWY |
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| glycine betaine biosynthesis II (Gram-positive bacteria) Accession ID: BioCyc:THAPS_PWY-3722 |
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| glycine betaine biosynthesis II (Gram-positive bacteria) Accession ID: BioCyc:CLOSSAC_PWY-3722 |
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| glycine betaine degradation II (mammalian) Accession ID: BioCyc:HUMAN_PWY-3661-1 |
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Binzak BA, Wevers RA, Moolenaar SH, Lee Y, Hwu W, Poggi-Bach J, Engelke UFH, Hoard HM, Vockley JG, Vockley J. Cloning of Dimethylglycine Dehydrogenase and a New Human Inborn Error of Metabolism, Dimethylglycine Dehydrogenase Deficiency. The American Journal of Human Genetics. 2001 Apr;68(4):839–47. doi: 10.1086/319520. |
| choline degradation II Accession ID: BioCyc:META_PWY-3721 |
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Ikuta S, Matuura K, Imamura S, Misaki H, Horiuti Y. Oxidative pathway of choline to betaine in the soluble fraction prepared from Arthrobacter globiformis. J Biochem. 1977 Jul;82(1):157–63. doi: 10.1093/oxfordjournals.jbchem.a131664. PMID: 197073. |
| D-carnitine degradation I Accession ID: BioCyc:META_PWY-7471 |
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Setyahadi S, Ueyama T, Arimoto T, Mori N, Kitamoto Y. Purification and Properties of a New Enzyme, D-Carnitine Dehydrogenase, fromAgrobacteriumsp. 525a. Bioscience, Biotechnology, and Biochemistry. 1997 Jan;61(6):1055–8. doi: 10.1271/bbb.61.1055.; Lindstedt G, Lindstedt S, Midtvedt T, Tofft M. Inducible ?-Butyrobetaine-Degrading Enzymes in Pseudomonas Species AK 1. J Bacteriol. 1970 Mar;101(3):1094–5. doi: 10.1128/jb.101.3.1094-1095.1970. |
| D-carnitine degradation II Accession ID: BioCyc:META_PWY-7472 |
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Eichler K, Bourgis F, Buchet A, Kleber H, Mandrand-Berthelot M. Molecular characterization of the cai operon necessary for carnitine metabolism in Escherichia coii. Molecular Microbiology. 1994 Sep;13(5):775–86. doi: 10.1111/j.1365-2958.1994.tb00470.x.; Lindstedt G, Lindstedt S, Midtvedt T, Tofft M. Inducible ?-Butyrobetaine-Degrading Enzymes in Pseudomonas Species AK 1. J Bacteriol. 1970 Mar;101(3):1094–5. doi: 10.1128/jb.101.3.1094-1095.1970. |
| glycine betaine biosynthesis II (Gram-positive bacteria) Accession ID: BioCyc:META_PWY-3722 |
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Boch J, Kempf B, Schmid R, Bremer E. Synthesis of the osmoprotectant glycine betaine in Bacillus subtilis: characterization of the gbsAB genes. J Bacteriol. 1996 Sep;178(17):5121–9. doi: 10.1128/jb.178.17.5121-5129.1996. |
| L-methionine salvage from L-homocysteine Accession ID: BioCyc:META_ADENOSYLHOMOCYSCAT-PWY |
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Szegedi SS, Castro CC, Koutmos M, Garrow TA: Betaine-homocysteine S-methyltransferase-2 is an S-methylmethionine-homocysteine methyltransferase. J Biol Chem. 2008 Apr 4;283(14):8939-45. doi: 10.1074/jbc.M710449200. Epub 2008 Jan 29.; Garrow TA. Purification, Kinetic Properties, and cDNA Cloning of Mammalian Betaine-Homocysteine Methyltransferase. Journal of Biological Chemistry. 1996 Sep;271(37):22831–8. doi: 10.1074/jbc.271.37.22831.; Banerjee RV, Matthews RG. Cobalamin-dependent methionine synthase. FASEB J. 1990 Mar;4(5):1450–9. doi: 10.1096/fasebj.4.5.2407589. PMID: 2407589.; DUERRE J, BRISKEANDERSON M. Effect of adenosine metabolites on methyltransferase reactions in isolated rat livers. Biochimica et Biophysica Acta (BBA) - General Subjects. 1981 Dec 04;678(2):275–82. doi: 10.1016/0304-4165(81)90217-8. |
| glycine betaine biosynthesis I (Gram-negative bacteria) Accession ID: BioCyc:ECOL199310_BETSYN-PWY |
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| glycine betaine biosynthesis I (Gram-negative bacteria) Accession ID: BioCyc:CAULO_BETSYN-PWY |
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