TCA cycle (ubiquinol-2)

Metabolites

(1R,2S)-1-Hydroxypropane-1,2,3-tricarboxylate

Formula: C6H8O7 (192.0270018)

CAS ID: 6061-97-8

(S)-Malate

Formula: C4H6O5 (134.0215226)

CAS ID: 97-67-6

2-Oxoglutarate

Formula: C5H6O5 (146.0215226)

CAS ID: 328-50-7

Acetyl-CoA

Formula: C23H38N7O17P3S (809.1257688000001)

CAS ID: 72-89-9

ADP

Formula: C10H15N5O10P2 (427.02941500000003)

CAS ID: 58-64-0

ATP

Formula: C10H16N5O13P3 (506.9957476)

CAS ID: 56-65-5

cis-Aconitate

Formula: C6H6O6 (174.01643760000002)

CAS ID: 585-84-2

CO2

Formula: CO2 (43.98983)

CAS ID: 124-38-9

H+

Formula: H (1.0078246)

CAS ID: 12408-02-5

H2O

Formula: H2O (18.0105642)

CAS ID: 7732-18-5

Hydroquinone

Formula: C6H6O2 (110.0367776)

CAS ID: 123-31-9

NAD+

Formula: C21H28N7O14P2 (664.1169428000001)

CAS ID: 53-84-9

NADH

Formula: C21H29N7O14P2 (665.1247674)

CAS ID: 58-68-4

NADP+

Formula: C21H29N7O17P3 (744.0832754)

CAS ID: 53-59-8

Oxaloacetate

Formula: C4H4O5 (132.00587339999998)

CAS ID: 328-42-7

p-Benzoquinone

Formula: C6H4O2 (108.0211284)

CAS ID: 106-51-4

Ubiquinone-2

Formula: C19H26O4 (318.1830996)

CAS ID: 606-06-4

phosphate(3-)

Formula: O4P (94.953423)

CAS ID: 14265-44-2



Enzyme

EC Number name full name note
1.1.1.37 malate dehydrogenase (S)-malate:NAD+ oxidoreductase
1.1.1.42 isocitrate dehydrogenase (NADP+) isocitrate:NADP+ oxidoreductase (decarboxylating)
1.1.5.4 malate dehydrogenase (quinone) (S)-malate:quinone oxidoreductase
1.2.4.2 oxoglutarate dehydrogenase (succinyl-transferring) 2-oxoglutarate:[dihydrolipoyllysine-residue succinyltransferase]-lipoyllysine 2-oxidoreductase (decarboxylating, acceptor-succinylating)
1.3.5.1 succinate dehydrogenase succinate:quinone oxidoreductase
1.8.1.4 dihydrolipoyl dehydrogenase protein-N6-(dihydrolipoyl)lysine:NAD+ oxidoreductase
2.3.1.61 dihydrolipoyllysine-residue succinyltransferase succinyl-CoA:enzyme-N6-(dihydrolipoyl)lysine S-succinyltransferase
2.3.3.16 citrate synthase (unknown stereospecificity) acetyl-CoA:oxaloacetate C-acetyltransferase (thioester-hydrolysing)
4.2.1.2 fumarate hydratase (S)-malate hydro-lyase (fumarate-forming)
4.2.1.3 aconitate hydratase citrate(isocitrate) hydro-lyase (cis-aconitate-forming)
4.2.1.81 D(-)-tartrate dehydratase (S,S)-tartrate hydro-lyase (oxaloacetate-forming)
4.2.1.99 2-methylisocitrate dehydratase (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate hydro-lyase [(Z)-but-2-ene-1,2,3-tricarboxylate-forming]
5.3.2.2 oxaloacetate tautomerase oxaloacetate keto---enol-isomerase
6.2.1.5 succinate-CoA ligase (ADP-forming) succinate:CoA ligase (ADP-forming)


Pathway Source

Organism Taxonomy Group Enzyme List Source Ratio
Escherichia coli K-12 MAGs 1.1.1.37 / 1.1.1.42 / 1.1.5.4 / 1.2.4.2 / 1.3.5.1 / 1.8.1.4 / 2.3.1.61 / 2.3.3.16 / 4.2.1.2 / 4.2.1.3 / 4.2.1.81 / 4.2.1.99 / 5.3.2.2 / 6.2.1.5 100.00%
Mycobacterium tuberculosis H37Rv MAGs 1.1.1.37 / 1.1.1.42 / 1.1.5.4 / 1.2.4.2 / 1.3.5.1 / 1.8.1.4 / 2.3.1.61 / 2.3.3.16 / 4.2.1.2 / 4.2.1.3 / 4.2.1.99 / 6.2.1.5 85.71%
Flavobacterium johnsoniae UW101 MAGs 1.1.1.37 / 1.1.1.42 / 1.1.5.4 / 1.2.4.2 / 1.3.5.1 / 1.8.1.4 / 2.3.1.61 / 2.3.3.16 / 4.2.1.2 / 4.2.1.3 / 4.2.1.99 / 6.2.1.5 85.71%
Cupriavidus taiwanensis bacteria 1.1.1.37 / 1.1.1.42 / 1.2.4.2 / 1.3.5.1 / 1.8.1.4 / 2.3.1.61 / 2.3.3.16 / 4.2.1.2 / 4.2.1.3 / 4.2.1.81 / 4.2.1.99 / 6.2.1.5 85.71%
Pseudomonas putida KT2440 MAGs 1.1.1.37 / 1.1.1.42 / 1.1.5.4 / 1.2.4.2 / 1.3.5.1 / 1.8.1.4 / 2.3.1.61 / 4.2.1.2 / 4.2.1.3 / 4.2.1.99 / 6.2.1.5 78.57%
Corynebacterium glutamicum ATCC 13032 MAGs 1.1.1.37 / 1.1.1.42 / 1.1.5.4 / 1.2.4.2 / 1.8.1.4 / 2.3.1.61 / 2.3.3.16 / 4.2.1.2 / 4.2.1.3 / 4.2.1.99 / 6.2.1.5 78.57%
Oryza sativa Japonica Group MAGs 1.1.1.37 / 1.1.1.42 / 1.2.4.2 / 1.3.5.1 / 1.8.1.4 / 2.3.1.61 / 2.3.3.16 / 4.2.1.2 / 4.2.1.3 / 5.3.2.2 / 6.2.1.5 78.57%
Paraburkholderia graminis bacteria 1.1.1.37 / 1.1.1.42 / 1.2.4.2 / 1.3.5.1 / 1.8.1.4 / 2.3.1.61 / 2.3.3.16 / 4.2.1.2 / 4.2.1.3 / 4.2.1.81 / 6.2.1.5 78.57%
Xylella fastidiosa Temecula1 MAGs 1.1.1.37 / 1.1.1.42 / 1.1.5.4 / 1.2.4.2 / 1.3.5.1 / 1.8.1.4 / 2.3.1.61 / 4.2.1.2 / 4.2.1.3 / 4.2.1.99 / 6.2.1.5 78.57%
Saccharomyces cerevisiae S288C MAGs 1.1.1.37 / 1.1.1.42 / 1.2.4.2 / 1.3.5.1 / 1.8.1.4 / 2.3.1.61 / 2.3.3.16 / 4.2.1.2 / 4.2.1.3 / 5.3.2.2 / 6.2.1.5 78.57%
Bacillus subtilis subsp. subtilis str. 168 MAGs 1.1.1.37 / 1.1.1.42 / 1.2.4.2 / 1.3.5.1 / 1.8.1.4 / 2.3.1.61 / 2.3.3.16 / 4.2.1.2 / 4.2.1.3 / 5.3.2.2 / 6.2.1.5 78.57%
Schizosaccharomyces pombe 972h- MAGs 1.1.1.37 / 1.1.1.42 / 1.2.4.2 / 1.3.5.1 / 1.8.1.4 / 2.3.1.61 / 2.3.3.16 / 4.2.1.2 / 4.2.1.3 / 5.3.2.2 / 6.2.1.5 78.57%
Pseudomonas aeruginosa PAO1 MAGs 1.1.1.42 / 1.1.5.4 / 1.2.4.2 / 1.3.5.1 / 1.8.1.4 / 2.3.1.61 / 2.3.3.16 / 4.2.1.2 / 4.2.1.3 / 4.2.1.99 / 6.2.1.5 78.57%
Aeromonas salmonicida subsp. salmonicida MAGs 1.1.1.37 / 1.1.1.42 / 1.2.4.2 / 1.3.5.1 / 1.8.1.4 / 2.3.1.61 / 2.3.3.16 / 4.2.1.2 / 4.2.1.3 / 4.2.1.99 / 6.2.1.5 78.57%
Mus musculus vertebrate_mammalian 1.1.1.37 / 1.1.1.42 / 1.2.4.2 / 1.3.5.1 / 1.8.1.4 / 2.3.1.61 / 4.2.1.2 / 4.2.1.3 / 5.3.2.2 / 6.2.1.5 71.43%
Diaphorina citri invertebrate 1.1.1.37 / 1.1.1.42 / 1.2.4.2 / 1.3.5.1 / 1.8.1.4 / 2.3.1.61 / 4.2.1.2 / 4.2.1.3 / 5.3.2.2 / 6.2.1.5 71.43%
Pseudomonas syringae pv. syringae MAGs 1.1.1.42 / 1.1.5.4 / 1.2.4.2 / 1.3.5.1 / 1.8.1.4 / 2.3.1.61 / 4.2.1.2 / 4.2.1.3 / 4.2.1.99 / 6.2.1.5 71.43%
Rattus norvegicus vertebrate_mammalian 1.1.1.37 / 1.1.1.42 / 1.2.4.2 / 1.3.5.1 / 1.8.1.4 / 2.3.1.61 / 4.2.1.2 / 4.2.1.3 / 5.3.2.2 / 6.2.1.5 71.43%
Escherichia coli O157:H7 MAGs 1.1.1.37 / 1.1.5.4 / 1.2.4.2 / 1.3.5.1 / 1.8.1.4 / 2.3.1.61 / 4.2.1.2 / 4.2.1.3 / 5.3.2.2 / 6.2.1.5 71.43%
Triticum aestivum plant 1.1.1.37 / 1.1.1.42 / 1.2.4.2 / 1.3.5.1 / 1.8.1.4 / 2.3.1.61 / 2.3.3.16 / 4.2.1.2 / 4.2.1.3 / 6.2.1.5 71.43%