Serine Biosynthesis and Metabolism

Metabolites

2-Oxoglutarate

Formula: C5H6O5 (146.0215226)

CAS ID: 328-50-7

3-Phosphonooxypyruvate

Formula: C3H5O7P (183.977291)

CAS ID: 3913-50-6

Acetyl-CoA

Formula: C23H38N7O17P3S (809.1257688000001)

CAS ID: 72-89-9

ADP

Formula: C10H15N5O10P2 (427.02941500000003)

CAS ID: 58-64-0

ATP

Formula: C10H16N5O13P3 (506.9957476)

CAS ID: 56-65-5

CO2

Formula: CO2 (43.98983)

CAS ID: 124-38-9

Dehydroalanine

Formula: C3H5NO2 (87.032027)

CAS ID: 1948-56-7

Glycerate 3-phosphate

Formula: C3H7O7P (185.9929402)

CAS ID: 820-11-1

H+

Formula: H (1.0078246)

CAS ID: 12408-02-5

H2O

Formula: H2O (18.0105642)

CAS ID: 7732-18-5

L-Glutamate

Formula: C5H9NO4 (147.0531554)

CAS ID: 56-86-0

L-Serine

Formula: C3H7NO3 (105.0425912)

CAS ID: 56-45-1

NAD+

Formula: C21H28N7O14P2 (664.1169428000001)

CAS ID: 53-84-9

NADH

Formula: C21H29N7O14P2 (665.1247674)

CAS ID: 58-68-4

NH4+

Formula: NH4 (18.0343724)

CAS ID: 14798-03-9

Pyruvate

Formula: C3H4O3 (88.0160434)

CAS ID: 127-17-3

phosphate(3-)

Formula: O4P (94.953423)

CAS ID: 14265-44-2

O-phosphoserine

Formula: C3H8NO6P (185.0089238)

CAS ID: 17885-08-4



Enzyme

EC Number name full name note
1.1.1.399 2-oxoglutarate reductase (R)-2-hydroxyglutarate,NAD+ 2-oxidireductase
1.1.1.95 phosphoglycerate dehydrogenase 3-phospho-D-glycerate:NAD+ 2-oxidoreductase
2.6.1.52 phosphoserine transaminase O-phospho-L-serine:2-oxoglutarate aminotransferase
3.1.3.3 phosphoserine phosphatase O-phosphoserine phosphohydrolase
4.3.1.17 L-serine ammonia-lyase L-serine ammonia-lyase (pyruvate-forming)
7.3.2.2 ABC-type phosphonate transporter ATP phosphohydrolase (ABC-type, phosphonate-importing)


Pathway Source

Organism Taxonomy Group Enzyme List Source Ratio
Escherichia coli O157:H7 MAGs 1.1.1.399 / 1.1.1.95 / 2.6.1.52 / 3.1.3.3 / 4.3.1.17 / 7.3.2.2 100.00%
Shigella flexneri bacteria 1.1.1.399 / 1.1.1.95 / 2.6.1.52 / 3.1.3.3 / 4.3.1.17 / 7.3.2.2 100.00%
Escherichia coli K-12 MAGs 1.1.1.399 / 1.1.1.95 / 2.6.1.52 / 3.1.3.3 / 4.3.1.17 / 7.3.2.2 100.00%
Aspergillus parasiticus MAGs 1.1.1.399 / 1.1.1.95 / 2.6.1.52 / 3.1.3.3 / 4.3.1.17 83.33%
Penicillium brevicompactum fungi 1.1.1.399 / 1.1.1.95 / 2.6.1.52 / 3.1.3.3 / 4.3.1.17 83.33%
Trichophyton rubrum fungi 1.1.1.399 / 1.1.1.95 / 2.6.1.52 / 3.1.3.3 / 4.3.1.17 83.33%
Monascus purpureus MAGs 1.1.1.399 / 1.1.1.95 / 2.6.1.52 / 3.1.3.3 / 4.3.1.17 83.33%
Penicillium griseofulvum fungi 1.1.1.399 / 1.1.1.95 / 2.6.1.52 / 3.1.3.3 / 4.3.1.17 83.33%
Streptomyces albogriseolus bacteria 1.1.1.399 / 1.1.1.95 / 2.6.1.52 / 3.1.3.3 / 4.3.1.17 83.33%
Torulaspora delbrueckii fungi 1.1.1.399 / 1.1.1.95 / 2.6.1.52 / 3.1.3.3 / 4.3.1.17 83.33%
Aspergillus oryzae fungi 1.1.1.399 / 1.1.1.95 / 2.6.1.52 / 3.1.3.3 / 4.3.1.17 83.33%
Penicillium chrysogenum fungi 1.1.1.399 / 1.1.1.95 / 2.6.1.52 / 3.1.3.3 / 4.3.1.17 83.33%
Lachancea fermentati MAGs 1.1.1.399 / 1.1.1.95 / 2.6.1.52 / 3.1.3.3 / 4.3.1.17 83.33%
Aspergillus flavus fungi 1.1.1.399 / 1.1.1.95 / 2.6.1.52 / 3.1.3.3 / 4.3.1.17 83.33%
Aspergillus niger fungi 1.1.1.399 / 1.1.1.95 / 2.6.1.52 / 3.1.3.3 / 4.3.1.17 83.33%
Zygosaccharomyces rouxii fungi 1.1.1.399 / 1.1.1.95 / 2.6.1.52 / 3.1.3.3 / 4.3.1.17 83.33%
Penicillium citrinum fungi 1.1.1.399 / 1.1.1.95 / 2.6.1.52 / 3.1.3.3 / 4.3.1.17 83.33%
Aspergillus tubingensis fungi 1.1.1.399 / 1.1.1.95 / 2.6.1.52 / 3.1.3.3 / 4.3.1.17 83.33%
Histoplasma capsulatum fungi 1.1.1.399 / 1.1.1.95 / 2.6.1.52 / 3.1.3.3 / 4.3.1.17 83.33%
Pseudomonas syringae pv. syringae MAGs 1.1.1.399 / 1.1.1.95 / 2.6.1.52 / 3.1.3.3 / 4.3.1.17 83.33%