Shigella flexneri

ncbi_taxid: 623 - Shigella flexneri(species); all_childs: 41434, 42897, 373383, 374923, 424717, 424718, 424719, 424720, 435321, 591020, 754091, 754092, 766145, 766146, 766147, 766148, 766149, 766150, 766151, 766152, 766153, 766154, 766155, 766156, 766157, 766158, 766159, 766160, 766161, 945360, 984898, 1210043, 1210044, 1212562, 1212566, 1212568, 1212569, 1212571, 1212578, 1282357, 1282358, 1288825, 1290392, 1434128, 1434129, 1434130, 1434131, 1434132, 1434133, 1434134, 1434135, 1434136, 1434137, 1434138, 1434139, 1434140, 1434141, 1434142, 1434143, 1434144, 1434145, 1434146, 1434147, 1434148, 1434149, 1434150, 1434151, 1434152, 1434153, 1434154, 1434155, 1434156, 1434157, 1434158, 1434159, 1434160, 1434161, 1434162, 1434163, 1434164, 1434165, 1434166, 1434167, 1434168, 1434169, 1434170, 1434171, 1434172, 1434173, 1434174, 1434175, 1434176, 1434177, 1434178, 1434179, 1434180, 1434181, 1434182, 1434183, 1434184, 1434185, 1434186, 1435046, 1617964, 1935181, 1935182, 2021401, 2049486, 2924859

taxonomy name: Shigella flexneri (species)
chinese name:
ancestor: Shigella (genus)
ncbi taxonomy: 623
GTDB taxonomy: 599451526

Organism Phenotype Traits

Trait Unit Trait Value Ontology Terms
[Environmental preferences/Atmosphere] aerotolerant boolean true MICRO:0000502
[Environmental preferences/Atmosphere] facultative anaerobe boolean true OMP:0000087
[Environmental preferences/Atmosphere] oxygen preference factor facultative anaerobic MICRO:0000491
[Environmental preferences/pH] pH growth pH 7.29 (7.105818 ~ 7.543827) OMP:0005008
[Environmental preferences/pH] pH maximum pH 9.76 (9.377775 ~ 10.187843) OMP:0005008
[Environmental preferences/pH] pH minimum pH 5.19 (5.0434666 ~ 5.4302707) OMP:0005008
[Environmental preferences/Salinity] salinity growth % NaCl (w/v) 2.09 (1.225272 ~ 2.8639793) OMP:0005013
[Environmental preferences/Salinity] salinity maximum % NaCl (w/v) 7.35 (5.995272 ~ 8.525251) OMP:0005013
[Environmental preferences/Salinity] salinity minimum % NaCl (w/v) OMP:0005013
[Environmental preferences/Temperature] temperature growth Celsius 33.59 (30 ~ 37) OMP:0005002
[Environmental preferences/Temperature] temperature maximum Celsius 40.79 (37 ~ 41) OMP:0005002
[Environmental preferences/Temperature] temperature minimum Celsius 28.95 (10 ~ 30) OMP:0005002
[Environmental preferences/Temperature] temperature preference factor mesophilic OMP:0005002
[Enzymes/Enzyme activity] enzyme activity: acid phosphatase (EC3.1.3.2) boolean true SNOMED:424017009, EC3.1.3.2
[Enzymes/Enzyme activity] enzyme activity: alkaline phosphatase (EC3.1.3.1) boolean true SNOMED:424017009, EC3.1.3.1
[Enzymes/Enzyme activity] enzyme activity: alpha-galactosidase (EC3.2.1.22) boolean No robust majority SNOMED:424017009, EC3.2.1.22
[Enzymes/Enzyme activity] enzyme activity: alpha-glucosidase (EC3.2.1.20) boolean No robust majority SNOMED:424017009, EC3.2.1.20
[Enzymes/Enzyme activity] enzyme activity: catalase (EC1.11.1.6) boolean true SNOMED:424017009, EC1.11.1.6
[Enzymes/Enzyme activity] enzyme activity: phenylalanine ammonia-lyase (EC4.3.1.24) boolean No robust majority SNOMED:424017009, EC4.3.1.24
[Genome/Composition] coding density % 87 (79.06 ~ 89.52) SIO:001276, mesh:D059646, SNOMED:258755000
[Genome/Composition] GC percentage % 50.57 (49.6 ~ 51.4) mesh:D001482
[Genome/Gene content] estimated gene count genes 4595.28 (4075 ~ 5580) OBI:0002568, gene, NCIT:C25498
[Genome/Gene content] gene count genes 4594.88 (3973 ~ 5580) OBI:0002568, gene
[Genome/Genome size] estimated genome size bp 4455366.18 (4052202.2 ~ 5383118) GENEPIO:0001561
[Genome/Genome size] info:genome size bp 4454975.43 (4051797 ~ 5383118) GENEPIO:0001561
View All Phenotype Traits

Taxonomy Lineage

Child Taxonomy

taxonomy name rank note
Shigella flexneri 1b serotype ncbi_taxid: 41434 - Shigella flexneri 1b(serotype); all_childs:
Shigella flexneri 2a serotype ncbi_taxid: 42897 - Shigella flexneri 2a(serotype); all_childs: 198214, 198215
Shigella flexneri 5 serotype ncbi_taxid: 373383 - Shigella flexneri 5(serotype); all_childs: 373384
Shigella flexneri 1a serotype ncbi_taxid: 374923 - Shigella flexneri 1a(serotype); all_childs:
Shigella flexneri 3a serotype ncbi_taxid: 424717 - Shigella flexneri 3a(serotype); all_childs:
Shigella flexneri 5a serotype ncbi_taxid: 424718 - Shigella flexneri 5a(serotype); all_childs: 1086030
Shigella flexneri 6 serotype ncbi_taxid: 424719 - Shigella flexneri 6(serotype); all_childs:
Shigella flexneri Y serotype ncbi_taxid: 424720 - Shigella flexneri Y(serotype); all_childs:
Shigella flexneri 3b serotype ncbi_taxid: 435321 - Shigella flexneri 3b(serotype); all_childs:
Shigella flexneri 2002017 strain ncbi_taxid: 591020 - Shigella flexneri 2002017(strain); all_childs:

Enzyme Proteins

protein id name ec_number function
A0A0H2US87 [UniProt] ospC3 4.3.99.- Arginine ADP-riboxanase OspC3
A0A0H2USG1 [UniProt] ipaH1.4 2.3.2.27 E3 ubiquitin-protein ligase IpaH1.4
Q83QS4 [UniProt] yfbR 3.1.3.89 5'-deoxynucleotidase YfbR
P37756 [UniProt] gnd 1.1.1.44 6-phosphogluconate dehydrogenase, decarboxylating
Q83LP7 [UniProt] pgl 3.1.1.31 6-phosphogluconolactonase
Q83JV7 [UniProt] aas 2.3.1.40 Bifunctional protein Aas
Q83JV7 [UniProt] aas 6.2.1.20 Bifunctional protein Aas
Q83R90 [UniProt] patD 1.2.1.- Gamma-aminobutyraldehyde dehydrogenase
Q83R90 [UniProt] patD 1.2.1.19 Gamma-aminobutyraldehyde dehydrogenase
P0ABD7 [UniProt] accA 2.1.3.15 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha
Q83KA2 [UniProt] accD 2.1.3.15 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta
Q83SG7 [UniProt] acpH 3.1.4.14 Putative acyl carrier protein phosphodiesterase
Q83K24 [UniProt] acpS 2.7.8.7 Holo-[acyl-carrier-protein] synthase
Q83LL9 [UniProt] yccX 3.6.1.7 Acylphosphatase
Q83RC0 [UniProt] add 3.5.4.4 Adenosine deaminase
Q7BZ90 [UniProt] ade 3.5.4.2 Adenine deaminase
P83844 [UniProt] nudF 3.6.1.13 ADP-ribose pyrophosphatase
Q83M39 [UniProt] aes 3.1.1.- Acetyl esterase
P0AE11 [UniProt] ahpC 1.11.1.26 Alkyl hydroperoxide reductase C
Q83QU0 [UniProt] ais 3.1.3.- Lipopolysaccharide core heptose(II)-phosphate phosphatase
P0A961 [UniProt] alaA 2.6.1.2 Glutamate-pyruvate aminotransferase AlaA
P0AB73 [UniProt] fbaA 4.1.2.13 Fructose-bisphosphate aldolase class 2
P0A958 [UniProt] ALKH_SHIFL 4.1.2.14 KHG/KDPG aldolase
P0A958 [UniProt] ALKH_SHIFL 4.1.3.42 KHG/KDPG aldolase
P63487 [UniProt] allA 4.3.2.3 Ureidoglycolate lyase
P0A6B5 [UniProt] alr 5.1.1.1 Alanine racemase, biosynthetic
Q83P64 [UniProt] pepA 3.4.11.1 Probable cytosol aminopeptidase
Q83P64 [UniProt] pepA 3.4.11.10 Probable cytosol aminopeptidase
Q83KX8 [UniProt] anmK 2.7.1.170 Anhydro-N-acetylmuramic acid kinase
Q83SQ2 [UniProt] apaH 3.6.1.41 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical
P0AE23 [UniProt] aphA 3.1.3.2 Class B acid phosphatase
Q83M42 [UniProt] apt 2.4.2.7 Adenine phosphoribosyltransferase
Q7UDT4 [UniProt] araA 5.3.1.4 L-arabinose isomerase
Q83MG5 [UniProt] araB 2.7.1.16 Ribulokinase
Q83KP2 [UniProt] araG 7.5.2.12 Arabinose import ATP-binding protein AraG

Metabolites Taxonomy Source

Creating taxonomically-informed metabolome libraries