Sphingosine (BioCAD00000017905)
blood feces urine epidermis fibroblasts intestine kidney leukocyte liver placenta platelet skeletal muscle spleen plant natural products marine natural products
Metabolite Card
Chinese Name: 鞘氨醇
Formula: C18H37NO2 (299.2824)
SMILES:
CCCCCCCCCCCCC\C=C\[C@@H](O)[C@@H](N)CO
Synonyms [en]
sphingosine; Sphing-4-enine; D-erythro-Sphingosine; Sphingoid; Sphingenine; (2S,3R,4E)-2-Amino-4-octadecene-1,3-diol
Last reviewed on 2026-04-16.
Cite this Page
Sphingosine. 数据之源,洞见之始. SMRUCC genomics institute, a synthetic life researcher from China.
https://biocad_registry.innovation.ac.cn/s/Sphingosine
(retrieved
2026-08-20) (CAD Registry RN: BioCAD00000017905). Licensed
under the Attribution-Noncommercial 4.0 International License (CC BY-NC 4.0).
Note
Sphingosine, also known as (4E)-sphingenine or sphing-4-enine, belongs to the class of organic compounds known as 1,2-aminoalcohols. These are organic compounds containing an alkyl chain with an amine group bound to the C1 atom and an alcohol group bound to the C2 atom. Sphingosine is an 18-carbon amino alcohol with an unsaturated hydrocarbon chain, which forms a primary part of sphingolipids. Sphingolipids are a class of cell membrane lipids that include sphingomyelin. Thus, sphingosine is considered to be a sphingoid base lipid. Sphingosine is a very hydrophobic molecule, practically insoluble (in water), and relatively neutral. Sphingosine is found in all living organisms ranging from bacteria to plants to humans. Sphingosine is synthesized from palmitoyl CoA and serine in a condensation required to yield dehydrosphingosine. Dehydrosphingosine is then reduced by NADPH to dihydrosphingosine (sphinganine), and finally oxidized by FAD to sphingosine. Within humans and other mammals, sphingosine participates in a number of enzymatic reactions. In particular, sphingosine can be converted into sphingosine 1-phosphate through its interaction with the enzyme sphingosine kinase 2. sphingosine 1-phosphate is an important signaling molecule. In addition, sphingosine can be biosynthesized from sphingosine 1-phosphate; which is mediated by the enzyme sphingosine-1-phosphate phosphatase 2. Sphingosine and its derivative sphinganine are the major bases of the sphingolipids in mammals. In humans, sphingosine is involved in globoid cell leukodystrophy.
DBLinks
- CAS Registry Number: 123-78-4
- PubChem CID: 5280335
- ChEBI: 16393
- HMDB: HMDB0000252
- LipidMaps: LMSP01010001
- KEGG: C00319
- BioCyc: SPHINGOSINE
- NCBI MeSH: Sphingosine
- Wikipedia: Sphingosine
Other DBLinks
- CAS Registry Number: 123-78-4
- CAS Registry Number: 125074-14-8
- CAS Registry Number: 2733-29-1
- CAS Registry Number: 89164-20-5
- PubChem: 31270
- PubChem: 5280335
- PubChem: 5353955
- PubChem: 637542
- ChEBI: ChEBI:16393
- ChEBI: ChEBI:194383
- HMDB: HMDB0000252
- HMDB: HMDB00252
- LipidMaps: LMSP01010001
- KEGG: C00319
- BioCyc: SPHINGOSINE
- NCBI MeSH: Sphingosine
- Wikipedia: Sphingosine
- DrugBank: DB03203
- RefMet: RM0135443
- MoNA: CCMSLIB00000479737
- MoNA: EMBL-MCF_spec322155
- MoNA: EMBL-MCF_spec322193
- MoNA: EMBL-MCF_spec322197
- MoNA: EMBL-MCF_spec322198
- MoNA: EMBL-MCF_spec322202
- MoNA: EMBL-MCF_spec322265
- MoNA: EMBL-MCF_spec331555
- MoNA: EMBL-MCF_spec331565
- MoNA: EMBL-MCF_spec331570
- MoNA: FiehnLib000696
- MoNA: FiehnLib000697
- MoNA: HMDB0000252_ms_ms_433
- MoNA: HMDB0000252_ms_ms_434
- MoNA: HMDB0000252_ms_ms_435
- MoNA: RP014701
- MoNA: RP014702
- MoNA: RP014703
- Metlin: METLIN_392
- Coconut NaturalProduct: CNP0149684.1
- Coconut NaturalProduct: CNP0149684.2
- Coconut NaturalProduct: CNP0282130.4
- metaboanalyst: 7e11a95d5ccc2e21ccef5232f3d460a6
- metaboanalyst: 94d3775a39e1035588cde8aaba465cf6
- metaboanalyst: cc7ae84a90cb3984b3751560c78b3ca9
- HERB: HBIN020141
- HERB: HBIN044503
Class / Ontology
- WishartLab ClassyFire: [Amines] Amines
- RefMet: [Sphingosines] Sphingosines
- LipidMaps: [Sphing-4-enines (Sphingosines) [SP0101]] Sphing-4-enines (Sphingosines) [SP0101]
- ChEBI: [CHEBI:16393] sphingosine
- ChEBI: [CHEBI:194383] C18_Sphingosine*
- Coconut NaturalProduct: [Arylnaphthalene and aryltetralin lignans] Arylnaphthalene and aryltetralin lignans
- Coconut NaturalProduct: [Sphingoid bases] Sphingoid bases
| ID | EC Number | Name |
|---|---|---|
| KEGG:R01493 | 3.5.1.23 | N-acylsphingosine amidohydrolase |
| KEGG:R01494 | 3.5.1.23 | N-acylsphingosine amidohydrolase |
| KEGG:R01496 | 2.3.1.24 | acyl-CoA:sphingosine N-acyltransferase |
| KEGG:R01926 | 2.7.1.91 | ATP:sphingosine 1-phosphotransferase; |
| KEGG:R01928 | 2.4.1.23 | UDP-alpha-D-galactose:sphingosine 1-beta-galactosyltransferase |
| KEGG:R01929 | 2.7.8.10 | CDP-choline:sphingosine cholinephosphotransferase |
| KEGG:R02979 | 1.3.99.- | C00836 + C00016<=>C01352 + C00319 |
| KEGG:R06521 | 3.1.3.4 | 3-sn-phosphatidate phosphohydrolase |
| KEGG:R13178 | 3.2.1.45 | D-glucosylsphingosine glucohydrolase |
| KEGG:R13179 | 3.2.1.46 | psychosine galactohydrolase |
| BioCyc:RXN3DJ-11417 | 2.7.1.91 | SPHINGOSINE + ATP --> PROTON + CPD3DJ-11366 + ADP |
| BioCyc:2.7.8.10-RXN | 2.7.8.10 | CDP-CHOLINE + SPHINGOSINE --> CPD-481 + CMP + PROTON |
| BioCyc:RXN-20352 | 2.3.1.24 | ACYL-COA + SPHINGOSINE --> N-Acylsphingosine + CO-A + PROTON |
| BioCyc:RXN-20356 | 2.3.1.298 | CPD-22025 + SPHINGOSINE --> CPD-22026 + CO-A + PROTON |
| BioCyc:2.4.1.23-RXN | 2.4.1.23 | CPD-14553 + SPHINGOSINE<=>PROTON + PSYCHOSINE + UDP |
| BioCyc:RXN3DJ-25 | CPD3DJ-11366 + WATER --> SPHINGOSINE + Pi | |
| BioCyc:CERAMIDASE-RXN | 3.5.1.23 | N-Acylsphingosine + WATER --> SPHINGOSINE + Fatty-Acids |
Taxonomy Source
- Haliclona koremella [ncbi taxid: 469341]
- Homo sapiens [ncbi taxid: 9606]
- Mus musculus [ncbi taxid: 10090]
- Pogostemon cablin [ncbi taxid: 28511]
- Wollemia nobilis [ncbi taxid: 56998]
Pathway Synthetic
| pathway id | name |
|---|---|
| WikiPathways:WP4725 | Sphingolipid metabolism overview |
| WikiPathways:WP1422 | Sphingolipid pathway |
| WikiPathways:WP3604 | Biochemical pathways: part I |
| WikiPathways:WP4690 | Sphingolipid metabolism (integrated pathway) |
| WikiPathways:WP3232 | Sphingolipid metabolism |
| WikiPathways:WP4344 | Sphingolipid metabolism overview |
| WikiPathways:WP4846 | SARS-CoV-2 and COVID-19 pathway |
| WikiPathways:WP5194 | Synthesis of ceramides and 1-deoxyceramides |
| WikiPathways:WP4726 | Sphingolipid metabolism: integrated pathway |
| WikiPathways:WP5143 | GDNF signaling |