Metabolite Card

Chinese Name: 鞘氨醇
Formula: C18H37NO2 (299.2824)
SMILES:

CCCCCCCCCCCCC\C=C\[C@@H](O)[C@@H](N)CO

Synonyms [en]

sphingosine; Sphing-4-enine; D-erythro-Sphingosine; Sphingoid; Sphingenine; (2S,3R,4E)-2-Amino-4-octadecene-1,3-diol

Reviewed

Last reviewed on 2026-04-16.

Cite this Page

Sphingosine. 数据之源,洞见之始. SMRUCC genomics institute, a synthetic life researcher from China. https://biocad_registry.innovation.ac.cn/s/Sphingosine (retrieved 2026-08-20) (CAD Registry RN: BioCAD00000017905). Licensed under the Attribution-Noncommercial 4.0 International License (CC BY-NC 4.0).

Note

Sphingosine, also known as (4E)-sphingenine or sphing-4-enine, belongs to the class of organic compounds known as 1,2-aminoalcohols. These are organic compounds containing an alkyl chain with an amine group bound to the C1 atom and an alcohol group bound to the C2 atom. Sphingosine is an 18-carbon amino alcohol with an unsaturated hydrocarbon chain, which forms a primary part of sphingolipids. Sphingolipids are a class of cell membrane lipids that include sphingomyelin. Thus, sphingosine is considered to be a sphingoid base lipid. Sphingosine is a very hydrophobic molecule, practically insoluble (in water), and relatively neutral. Sphingosine is found in all living organisms ranging from bacteria to plants to humans. Sphingosine is synthesized from palmitoyl CoA and serine in a condensation required to yield dehydrosphingosine. Dehydrosphingosine is then reduced by NADPH to dihydrosphingosine (sphinganine), and finally oxidized by FAD to sphingosine. Within humans and other mammals, sphingosine participates in a number of enzymatic reactions. In particular, sphingosine can be converted into sphingosine 1-phosphate through its interaction with the enzyme sphingosine kinase 2. sphingosine 1-phosphate is an important signaling molecule. In addition, sphingosine can be biosynthesized from sphingosine 1-phosphate; which is mediated by the enzyme sphingosine-1-phosphate phosphatase 2. Sphingosine and its derivative sphinganine are the major bases of the sphingolipids in mammals. In humans, sphingosine is involved in globoid cell leukodystrophy.

Entity Information

DBLinks

Other DBLinks
  • CAS Registry Number: 123-78-4
  • CAS Registry Number: 125074-14-8
  • CAS Registry Number: 2733-29-1
  • CAS Registry Number: 89164-20-5
  • PubChem: 31270
  • PubChem: 5280335
  • PubChem: 5353955
  • PubChem: 637542
  • ChEBI: ChEBI:16393
  • ChEBI: ChEBI:194383
  • HMDB: HMDB0000252
  • HMDB: HMDB00252
  • LipidMaps: LMSP01010001
  • KEGG: C00319
  • BioCyc: SPHINGOSINE
  • NCBI MeSH: Sphingosine
  • Wikipedia: Sphingosine
  • DrugBank: DB03203
  • RefMet: RM0135443
  • MoNA: CCMSLIB00000479737
  • MoNA: EMBL-MCF_spec322155
  • MoNA: EMBL-MCF_spec322193
  • MoNA: EMBL-MCF_spec322197
  • MoNA: EMBL-MCF_spec322198
  • MoNA: EMBL-MCF_spec322202
  • MoNA: EMBL-MCF_spec322265
  • MoNA: EMBL-MCF_spec331555
  • MoNA: EMBL-MCF_spec331565
  • MoNA: EMBL-MCF_spec331570
  • MoNA: FiehnLib000696
  • MoNA: FiehnLib000697
  • MoNA: HMDB0000252_ms_ms_433
  • MoNA: HMDB0000252_ms_ms_434
  • MoNA: HMDB0000252_ms_ms_435
  • MoNA: RP014701
  • MoNA: RP014702
  • MoNA: RP014703
  • Metlin: METLIN_392
  • Coconut NaturalProduct: CNP0149684.1
  • Coconut NaturalProduct: CNP0149684.2
  • Coconut NaturalProduct: CNP0282130.4
  • metaboanalyst: 7e11a95d5ccc2e21ccef5232f3d460a6
  • metaboanalyst: 94d3775a39e1035588cde8aaba465cf6
  • metaboanalyst: cc7ae84a90cb3984b3751560c78b3ca9
  • HERB: HBIN020141
  • HERB: HBIN044503

Class / Ontology

Metabolic Network
ID EC Number Name
KEGG:R01493 3.5.1.23 N-acylsphingosine amidohydrolase
KEGG:R01494 3.5.1.23 N-acylsphingosine amidohydrolase
KEGG:R01496 2.3.1.24 acyl-CoA:sphingosine N-acyltransferase
KEGG:R01926 2.7.1.91 ATP:sphingosine 1-phosphotransferase;
KEGG:R01928 2.4.1.23 UDP-alpha-D-galactose:sphingosine 1-beta-galactosyltransferase
KEGG:R01929 2.7.8.10 CDP-choline:sphingosine cholinephosphotransferase
KEGG:R02979 1.3.99.- C00836 + C00016<=>C01352 + C00319
KEGG:R06521 3.1.3.4 3-sn-phosphatidate phosphohydrolase
KEGG:R13178 3.2.1.45 D-glucosylsphingosine glucohydrolase
KEGG:R13179 3.2.1.46 psychosine galactohydrolase
BioCyc:RXN3DJ-11417 2.7.1.91 SPHINGOSINE + ATP --> PROTON + CPD3DJ-11366 + ADP
BioCyc:2.7.8.10-RXN 2.7.8.10 CDP-CHOLINE + SPHINGOSINE --> CPD-481 + CMP + PROTON
BioCyc:RXN-20352 2.3.1.24 ACYL-COA + SPHINGOSINE --> N-Acylsphingosine + CO-A + PROTON
BioCyc:RXN-20356 2.3.1.298 CPD-22025 + SPHINGOSINE --> CPD-22026 + CO-A + PROTON
BioCyc:2.4.1.23-RXN 2.4.1.23 CPD-14553 + SPHINGOSINE<=>PROTON + PSYCHOSINE + UDP
BioCyc:RXN3DJ-25 CPD3DJ-11366 + WATER --> SPHINGOSINE + Pi
BioCyc:CERAMIDASE-RXN 3.5.1.23 N-Acylsphingosine + WATER --> SPHINGOSINE + Fatty-Acids
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Mass Spectrum
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View All Mass Spectrum
Organism Source

Taxonomy Source

  1. Haliclona koremella [ncbi taxid: 469341]
  2. Homo sapiens [ncbi taxid: 9606]
  3. Mus musculus [ncbi taxid: 10090]
  4. Pogostemon cablin [ncbi taxid: 28511]
  5. Wollemia nobilis [ncbi taxid: 56998]

Pathway Synthetic

pathway id name
WikiPathways:WP4725 Sphingolipid metabolism overview
WikiPathways:WP1422 Sphingolipid pathway
WikiPathways:WP3604 Biochemical pathways: part I
WikiPathways:WP4690 Sphingolipid metabolism (integrated pathway)
WikiPathways:WP3232 Sphingolipid metabolism
WikiPathways:WP4344 Sphingolipid metabolism overview
WikiPathways:WP4846 SARS-CoV-2 and COVID-19 pathway
WikiPathways:WP5194 Synthesis of ceramides and 1-deoxyceramides
WikiPathways:WP4726 Sphingolipid metabolism: integrated pathway
WikiPathways:WP5143 GDNF signaling
View All Pathways