Bdellovibrio

ncbi_taxid: 958 - Bdellovibrio(genus); all_childs: 959, 163517, 2633795, 2835041, 2972972, 3394235

taxonomy name: Bdellovibrio (genus)
chinese name:
ancestor: Pseudobdellovibrionaceae (family)
ncbi taxonomy: 958
GTDB taxonomy:

Organism Phenotype Traits

Trait Unit Trait Value Ontology Terms
[Environmental preferences/Atmosphere] aerotolerant boolean true MICRO:0000502
[Environmental preferences/Atmosphere] capnophilic boolean No robust majority SNOMED:413748004
[Environmental preferences/Atmosphere] obligate aerobic boolean true OMP:0000185
[Environmental preferences/Atmosphere] oxygen preference factor aerobic MICRO:0000491
[Environmental preferences/pH] pH growth pH 6.96 (6.479017 ~ 7.7880836) OMP:0005008
[Environmental preferences/pH] pH maximum pH 8.26 (7.4 ~ 9.275878) OMP:0005008
[Environmental preferences/pH] pH minimum pH 5.41 (5.0868626 ~ 6.5) OMP:0005008
[Environmental preferences/Salinity] salinity growth % NaCl (w/v) 0.16 (0 ~ 1.7022592) OMP:0005013
[Environmental preferences/Salinity] salinity maximum % NaCl (w/v) 2.06 (0 ~ 5.321406) OMP:0005013
[Environmental preferences/Salinity] salinity minimum % NaCl (w/v) 0.15 (0 ~ 0.76097417) OMP:0005013
[Environmental preferences/Salinity] salinity preference factor non-halophilic OMP:0005013
[Environmental preferences/Temperature] temperature growth Celsius 25.46 (14.155487 ~ 33.43016) OMP:0005002
[Environmental preferences/Temperature] temperature maximum Celsius 32.07 (21.838755 ~ 41.528885) OMP:0005002
[Environmental preferences/Temperature] temperature minimum Celsius 8.64 (2.5896878 ~ 28) OMP:0005002
[Environmental preferences/Temperature] temperature preference factor mesophilic OMP:0005002
[Enzymes/Enzyme activity] enzyme activity: alkaline phosphatase (EC3.1.3.1) boolean No robust majority SNOMED:424017009, EC3.1.3.1
[Enzymes/Enzyme activity] enzyme activity: arginine dihydrolase (EC3.5.3.6) boolean No robust majority SNOMED:424017009, EC3.5.3.6
[Enzymes/Enzyme activity] enzyme activity: catalase (EC1.11.1.6) boolean true SNOMED:424017009, EC1.11.1.6
[Enzymes/Enzyme activity] enzyme activity: coagulase boolean No robust majority SNOMED:424017009
[Enzymes/Enzyme activity] enzyme activity: lipase boolean true SNOMED:424017009
[Enzymes/Enzyme activity] enzyme activity: ornithine decarboxylase (EC4.1.1.17) boolean No robust majority SNOMED:424017009, EC4.1.1.17
[Enzymes/Enzyme activity] enzyme activity: oxidase boolean true SNOMED:424017009
[Enzymes/Enzyme activity] enzyme activity: pyrrolidonyl arylamidase (EC3.4.19.3) boolean true SNOMED:424017009, EC3.4.19.3
[Genome/Composition] coding density % 92.5 (89.36 ~ 94.35) SIO:001276, mesh:D059646, SNOMED:258755000
[Genome/Composition] GC percentage % 40.43 (33.3 ~ 50.7) mesh:D001482
View All Phenotype Traits

Taxonomy Lineage

Child Taxonomy

taxonomy name rank note
Bdellovibrio bacteriovorus species ncbi_taxid: 959 - Bdellovibrio bacteriovorus(species); all_childs: 264462, 765869, 1069642
environmental samples no rank ncbi_taxid: 163517 - environmental samples(no rank); all_childs: 163518, 239744
unclassified Bdellovibrio no rank ncbi_taxid: 2633795 - unclassified Bdellovibrio(no rank); all_childs: 28201, 97083, 97086, 97087, 97088, 97090, 97091, 97092, 99895, 126579, 133189, 191642, 191643, 191731, 191732, 191733, 191734, 191735, 191736, 191737, 191738, 191739, 191740, 191741, 191742, 191743, 191744, 191745, 191746, 242941, 242942, 242943, 242944, 242945, 242946, 242947, 242948, 242949, 242950, 242951, 362448, 420951, 499985, 561503, 712185, 742449, 743434, 743435, 743436, 743437, 743438, 743439, 743440, 743441, 743442, 743443, 743444, 743445, 743446, 743447, 743448, 743449, 743450, 743909, 743910, 743911, 743912, 743913, 743914, 743915, 743916, 743917, 743918, 743919, 743920, 743921, 743922, 743923, 743924, 907363, 1326788, 1331510, 1331511, 1331512, 1331513, 1569284, 1660090, 1732569, 1851409, 1916293, 1961378, 1970323, 1975525, 1975526, 1975527, 1975528, 1975529, 2220073, 2231053, 2748865, 2749979, 3044166, 3113893, 3113894, 3113895, 3136281, 3136282, 3391182, 3394234, 3394354, 3394355, 3394356, 3394358, 3394359, 3394361, 3394362, 3395379
Bdellovibrio reynosensis species ncbi_taxid: 2835041 - Bdellovibrio reynosensis(species); all_childs:
Bdellovibrio svalbardensis species ncbi_taxid: 2972972 - Bdellovibrio svalbardensis(species); all_childs:
Bdellovibrio sp. HCB185ZH species ncbi_taxid: 3394235 - Bdellovibrio sp. HCB185ZH(species); all_childs:

Enzyme Proteins

protein id name ec_number function

Metabolites Taxonomy Source

Creating taxonomically-informed metabolome libraries