Citrobacter farmeri

ncbi_taxid: 67824 - Citrobacter farmeri(species); all_childs: 1114922

taxonomy name: Citrobacter farmeri (species)
chinese name:
ancestor: Citrobacter (genus)
ncbi taxonomy: 67824
GTDB taxonomy: 723802462

Organism Phenotype Traits

Trait Unit Trait Value Ontology Terms
[Environmental preferences/Atmosphere] aerotolerant boolean true MICRO:0000502
[Environmental preferences/Atmosphere] facultative anaerobe boolean true OMP:0000087
[Environmental preferences/Atmosphere] oxygen preference factor aerobic MICRO:0000491
[Environmental preferences/pH] pH growth pH 7.37 (7.2294683 ~ 7.531149) OMP:0005008
[Environmental preferences/pH] pH maximum pH 9.81 (9.588387 ~ 10.091226) OMP:0005008
[Environmental preferences/pH] pH minimum pH 5.34 (5.272046 ~ 5.4046903) OMP:0005008
[Environmental preferences/Salinity] salinity growth % NaCl (w/v) 2.15 (1.7871069 ~ 2.828376) OMP:0005013
[Environmental preferences/Salinity] salinity maximum % NaCl (w/v) 7.31 (6.872711 ~ 8.36058) OMP:0005013
[Environmental preferences/Salinity] salinity minimum % NaCl (w/v) OMP:0005013
[Environmental preferences/Temperature] temperature growth Celsius 32.33 (30 ~ 37) OMP:0005002
[Environmental preferences/Temperature] temperature maximum Celsius 41 OMP:0005002
[Environmental preferences/Temperature] temperature minimum Celsius 6.67 (5 ~ 10) OMP:0005002
[Enzymes/Enzyme activity] enzyme activity: acid phosphatase (EC3.1.3.2) boolean true SNOMED:424017009, EC3.1.3.2
[Enzymes/Enzyme activity] enzyme activity: alcohol dehydrogenase (EC1.1.1.1) boolean No robust majority SNOMED:424017009, EC1.1.1.1
[Enzymes/Enzyme activity] enzyme activity: alkaline phosphatase (EC3.1.3.1) boolean true SNOMED:424017009, EC3.1.3.1
[Enzymes/Enzyme activity] enzyme activity: alpha-galactosidase (EC3.2.1.22) boolean No robust majority SNOMED:424017009, EC3.2.1.22
[Enzymes/Enzyme activity] enzyme activity: alpha-glucosidase (EC3.2.1.20) boolean No robust majority SNOMED:424017009, EC3.2.1.20
[Enzymes/Enzyme activity] enzyme activity: arginine dihydrolase (EC3.5.3.6) boolean true SNOMED:424017009, EC3.5.3.6
[Enzymes/Enzyme activity] enzyme activity: beta-galactosidase (EC3.2.1.23) boolean No robust majority SNOMED:424017009, EC3.2.1.23
[Enzymes/Enzyme activity] enzyme activity: beta-glucosidase (EC3.2.1.21) boolean No robust majority SNOMED:424017009, EC3.2.1.21
[Enzymes/Enzyme activity] enzyme activity: catalase (EC1.11.1.6) boolean true SNOMED:424017009, EC1.11.1.6
[Enzymes/Enzyme activity] enzyme activity: L-aspartate arylamidase (EC3.4.11.21) boolean true SNOMED:424017009, EC3.4.11.21
[Enzymes/Enzyme activity] enzyme activity: ornithine decarboxylase (EC4.1.1.17) boolean true SNOMED:424017009, EC4.1.1.17
[Enzymes/Enzyme activity] enzyme activity: pyrrolidonyl arylamidase (EC3.4.19.3) boolean true SNOMED:424017009, EC3.4.19.3
[Genome/Composition] coding density % 89.04 (88.22 ~ 90.24) SIO:001276, mesh:D059646, SNOMED:258755000
View All Phenotype Traits

Taxonomy Lineage

Child Taxonomy

taxonomy name rank note
Citrobacter farmeri GTC 1319 strain ncbi_taxid: 1114922 - Citrobacter farmeri GTC 1319(strain); all_childs:

Enzyme Proteins

protein id name ec_number function

Metabolites Taxonomy Source

Creating taxonomically-informed metabolome libraries