Edwardsiella tarda

ncbi_taxid: 636 - Edwardsiella tarda(species); all_childs: 500638, 667121, 718251, 1027364, 1331000, 1331001, 1331003, 1331004, 1331005, 1331006, 1418111, 1418112, 1436303, 1436304

taxonomy name: Edwardsiella tarda (species)
chinese name:
ancestor: Edwardsiella (genus)
ncbi taxonomy: 636
GTDB taxonomy: 1078261778

Organism Phenotype Traits

Trait Unit Trait Value Ontology Terms
[Environmental preferences/Atmosphere] aerotolerant boolean true MICRO:0000502
[Environmental preferences/Atmosphere] facultative anaerobe boolean true OMP:0000087
[Environmental preferences/Atmosphere] oxygen preference factor facultative anaerobic MICRO:0000491
[Environmental preferences/pH] pH growth pH 6.81 (6.608522 ~ 6.989022) OMP:0005008
[Environmental preferences/pH] pH maximum pH 8.85 (8.406021 ~ 9.137768) OMP:0005008
[Environmental preferences/pH] pH minimum pH 4.62 (4.506154 ~ 4.778076) OMP:0005008
[Environmental preferences/Salinity] salinity growth % NaCl (w/v) 2.52 (1.8716371 ~ 2.9365337) OMP:0005013
[Environmental preferences/Salinity] salinity maximum % NaCl (w/v) 7.1 (5.4538245 ~ 8.416201) OMP:0005013
[Environmental preferences/Salinity] salinity minimum % NaCl (w/v) 0.03 (0 ~ 0.27387694) OMP:0005013
[Environmental preferences/Temperature] temperature growth Celsius 34.35 (28 ~ 37) OMP:0005002
[Environmental preferences/Temperature] temperature maximum Celsius 41 OMP:0005002
[Environmental preferences/Temperature] temperature minimum Celsius 10 OMP:0005002
[Environmental preferences/Temperature] temperature preference factor mesophilic OMP:0005002
[Enzymes/Enzyme activity] enzyme activity: acid phosphatase (EC3.1.3.2) boolean true SNOMED:424017009, EC3.1.3.2
[Enzymes/Enzyme activity] enzyme activity: alkaline phosphatase (EC3.1.3.1) boolean true SNOMED:424017009, EC3.1.3.1
[Enzymes/Enzyme activity] enzyme activity: catalase (EC1.11.1.6) boolean true SNOMED:424017009, EC1.11.1.6
[Enzymes/Enzyme activity] enzyme activity: DNase boolean No robust majority SNOMED:424017009
[Enzymes/Enzyme activity] enzyme activity: lysine decarboxylase (EC4.1.1.18) boolean true SNOMED:424017009, EC4.1.1.18
[Enzymes/Enzyme activity] enzyme activity: ornithine decarboxylase (EC4.1.1.17) boolean true SNOMED:424017009, EC4.1.1.17
[Genome/Composition] coding density % 84.42 (77.5 ~ 88.02) SIO:001276, mesh:D059646, SNOMED:258755000
[Genome/Composition] GC percentage % 57.75 (56.9 ~ 59.7) mesh:D001482
[Genome/Gene content] estimated gene count genes 3125.8 (2715.9 ~ 3569.8) OBI:0002568, gene, NCIT:C25498
[Genome/Gene content] gene count genes 2838.45 (1434 ~ 3568) OBI:0002568, gene
[Genome/Genome size] estimated genome size bp 3292486.4 (2740583.2 ~ 3856306) GENEPIO:0001561
[Genome/Genome size] info:genome size bp 3003094.41 (1447028 ~ 3856306) GENEPIO:0001561
View All Phenotype Traits

Taxonomy Lineage

Child Taxonomy

taxonomy name rank note
Edwardsiella tarda ATCC 23685 strain ncbi_taxid: 500638 - Edwardsiella tarda ATCC 23685(strain); all_childs:
Edwardsiella tarda ATCC 15947 = NBRC 105688 strain ncbi_taxid: 667121 - Edwardsiella tarda ATCC 15947 = NBRC 105688(strain); all_childs:
Edwardsiella tarda FL6-60 strain ncbi_taxid: 718251 - Edwardsiella tarda FL6-60(strain); all_childs:
Edwardsiella tarda DT strain ncbi_taxid: 1027364 - Edwardsiella tarda DT(strain); all_childs:
Edwardsiella tarda NUF806 strain ncbi_taxid: 1331000 - Edwardsiella tarda NUF806(strain); all_childs:
Edwardsiella tarda E22 strain ncbi_taxid: 1331001 - Edwardsiella tarda E22(strain); all_childs:
Edwardsiella tarda SU100 strain ncbi_taxid: 1331003 - Edwardsiella tarda SU100(strain); all_childs:
Edwardsiella tarda SU117 strain ncbi_taxid: 1331004 - Edwardsiella tarda SU117(strain); all_childs:
Edwardsiella tarda SU138 strain ncbi_taxid: 1331005 - Edwardsiella tarda SU138(strain); all_childs:
Edwardsiella tarda SU244 strain ncbi_taxid: 1331006 - Edwardsiella tarda SU244(strain); all_childs:

Enzyme Proteins

protein id name ec_number function
Q4G4B1 [UniProt] katG 1.11.1.21 Catalase-peroxidase
Q9AML4 [UniProt] pstB 7.3.2.1 Phosphate import ATP-binding protein PstB

Metabolites Taxonomy Source

Creating taxonomically-informed metabolome libraries