Shigella boydii

ncbi_taxid: 621 - Shigella boydii(species); all_childs: 300268, 344609, 766138, 766139, 766140, 1118236, 1212567, 1212570, 1212573, 1212574, 1212575, 1212576, 1212577, 1212579

taxonomy name: Shigella boydii (species)
chinese name:
ancestor: Shigella (genus)
ncbi taxonomy: 621
GTDB taxonomy: 599451526

Organism Phenotype Traits

Trait Unit Trait Value Ontology Terms
[Environmental preferences/Atmosphere] aerotolerant boolean true MICRO:0000502
[Environmental preferences/Atmosphere] facultative anaerobe boolean true OMP:0000087
[Environmental preferences/Atmosphere] oxygen preference factor facultative anaerobic MICRO:0000491
[Environmental preferences/pH] pH growth pH 7.24 (6.95201 ~ 7.517746) OMP:0005008
[Environmental preferences/pH] pH maximum pH 9.61 (9.184671 ~ 10.172393) OMP:0005008
[Environmental preferences/pH] pH minimum pH 5.22 (4.8545365 ~ 5.412723) OMP:0005008
[Environmental preferences/Salinity] salinity growth % NaCl (w/v) 2.21 (1.3448193 ~ 2.6586204) OMP:0005013
[Environmental preferences/Salinity] salinity maximum % NaCl (w/v) 7.64 (6.0253744 ~ 8.500022) OMP:0005013
[Environmental preferences/Salinity] salinity minimum % NaCl (w/v) OMP:0005013
[Environmental preferences/Salinity] salinity preference factor non-halophilic OMP:0005013
[Environmental preferences/Temperature] temperature growth Celsius 31.95 (30 ~ 37) OMP:0005002
[Environmental preferences/Temperature] temperature maximum Celsius 41 OMP:0005002
[Environmental preferences/Temperature] temperature minimum Celsius 30 OMP:0005002
[Environmental preferences/Temperature] temperature preference factor mesophilic OMP:0005002
[Enzymes/Enzyme activity] enzyme activity: acid phosphatase (EC3.1.3.2) boolean true SNOMED:424017009, EC3.1.3.2
[Enzymes/Enzyme activity] enzyme activity: alkaline phosphatase (EC3.1.3.1) boolean true SNOMED:424017009, EC3.1.3.1
[Enzymes/Enzyme activity] enzyme activity: alpha-galactosidase (EC3.2.1.22) boolean No robust majority SNOMED:424017009, EC3.2.1.22
[Enzymes/Enzyme activity] enzyme activity: alpha-glucosidase (EC3.2.1.20) boolean No robust majority SNOMED:424017009, EC3.2.1.20
[Enzymes/Enzyme activity] enzyme activity: beta-glucuronidase (EC3.2.1.31) boolean No robust majority SNOMED:424017009, EC3.2.1.31
[Enzymes/Enzyme activity] enzyme activity: catalase (EC1.11.1.6) boolean true SNOMED:424017009, EC1.11.1.6
[Enzymes/Enzyme activity] enzyme activity: ornithine decarboxylase (EC4.1.1.17) boolean true SNOMED:424017009, EC4.1.1.17
[Genome/Composition] coding density % 87.03 (68.51 ~ 88.3) SIO:001276, mesh:D059646, SNOMED:258755000
[Genome/Composition] GC percentage % 50.79 (49.8 ~ 59.5) mesh:D001482
[Genome/Gene content] estimated gene count genes 4532.66 (4015 ~ 6171.7) OBI:0002568, gene, NCIT:C25498
[Genome/Gene content] gene count genes 4531.01 (4015 ~ 5980) OBI:0002568, gene
View All Phenotype Traits

Taxonomy Lineage

Child Taxonomy

taxonomy name rank note
Shigella boydii Sb227 strain ncbi_taxid: 300268 - Shigella boydii Sb227(strain); all_childs:
Shigella boydii CDC 3083-94 strain ncbi_taxid: 344609 - Shigella boydii CDC 3083-94(strain); all_childs:
Shigella boydii 965-58 strain ncbi_taxid: 766138 - Shigella boydii 965-58(strain); all_childs:
Shigella boydii 3594-74 strain ncbi_taxid: 766139 - Shigella boydii 3594-74(strain); all_childs:
Shigella boydii 4444-74 strain ncbi_taxid: 766140 - Shigella boydii 4444-74(strain); all_childs:
Shigella boydii 08-0009 strain ncbi_taxid: 1118236 - Shigella boydii 08-0009(strain); all_childs:
Shigella boydii S6614 strain ncbi_taxid: 1212567 - Shigella boydii S6614(strain); all_childs:
Shigella boydii S7334 strain ncbi_taxid: 1212570 - Shigella boydii S7334(strain); all_childs:
Shigella boydii 08-0280 strain ncbi_taxid: 1212573 - Shigella boydii 08-0280(strain); all_childs:
Shigella boydii 08-2671 strain ncbi_taxid: 1212574 - Shigella boydii 08-2671(strain); all_childs:

Enzyme Proteins

protein id name ec_number function
P41578 [UniProt] gnd 1.1.1.44 6-phosphogluconate dehydrogenase, decarboxylating
P0A6B6 [UniProt] alr 5.1.1.1 Alanine racemase, biosynthetic
Q59827 [UniProt] dgt 3.1.5.1 Deoxyguanosinetriphosphate triphosphohydrolase
A0A3Z7J6R4 [UniProt] ospZ 2.1.1.- Cysteine S-methyltransferase OspZ
Q2ET28 [UniProt] ospF 4.2.3.- Phosphothreonine lyase OspF
B5L3X1 [UniProt] wfeD 2.4.1.304 UDP-Gal:alpha-D-GlcNAc-diphosphoundecaprenol beta-1,4-galactosyltransferase

Metabolites Taxonomy Source

Creating taxonomically-informed metabolome libraries