Atopostipes

ncbi_taxid: 292480 - Atopostipes(genus); all_childs: 180295, 349264, 2643812, 2838467

taxonomy name: Atopostipes (genus)
chinese name:
ancestor: Carnobacteriaceae (family)
ncbi taxonomy: 292480
GTDB taxonomy:

Organism Phenotype Traits

Trait Unit Trait Value Ontology Terms
[Environmental preferences/Atmosphere] aerotolerant boolean true MICRO:0000502
[Environmental preferences/Atmosphere] facultative anaerobe boolean No robust majority OMP:0000087
[Environmental preferences/Atmosphere] oxygen preference factor aerobic MICRO:0000491
[Environmental preferences/pH] pH growth pH 9.27 (8.8838625 ~ 10.264557) OMP:0005008
[Environmental preferences/pH] pH maximum pH 10.21 (9.788352 ~ 11.529966) OMP:0005008
[Environmental preferences/pH] pH minimum pH 7.7 (7.300659 ~ 8.323931) OMP:0005008
[Environmental preferences/Salinity] salinity growth % NaCl (w/v) 5.99 (4.4053764 ~ 8.108533) OMP:0005013
[Environmental preferences/Salinity] salinity maximum % NaCl (w/v) 16.13 (11.471541 ~ 20.046045) OMP:0005013
[Environmental preferences/Salinity] salinity minimum % NaCl (w/v) 1.35 (0 ~ 2.0675464) OMP:0005013
[Environmental preferences/Temperature] temperature growth Celsius 36.03 (30 ~ 39.618538) OMP:0005002
[Environmental preferences/Temperature] temperature maximum Celsius 44.08 (30 ~ 48.770527) OMP:0005002
[Environmental preferences/Temperature] temperature minimum Celsius 20.94 (17.65363 ~ 28) OMP:0005002
[Enzymes/Enzyme activity] enzyme activity: alkaline phosphatase (EC3.1.3.1) boolean No robust majority SNOMED:424017009, EC3.1.3.1
[Enzymes/Enzyme activity] enzyme activity: arginine dihydrolase (EC3.5.3.6) boolean No robust majority SNOMED:424017009, EC3.5.3.6
[Enzymes/Enzyme activity] enzyme activity: coagulase boolean true SNOMED:424017009
[Enzymes/Enzyme activity] enzyme activity: DNase boolean No robust majority SNOMED:424017009
[Enzymes/Enzyme activity] enzyme activity: pyrrolidonyl arylamidase (EC3.4.19.3) boolean No robust majority SNOMED:424017009, EC3.4.19.3
[Genome/Composition] coding density % 86.88 (85.29 ~ 88.86) SIO:001276, mesh:D059646, SNOMED:258755000
[Genome/Composition] GC percentage % 36.53 (34.8 ~ 38.2) mesh:D001482
[Genome/Gene content] estimated gene count genes 1921.32 (1043.4 ~ 2693.3) OBI:0002568, gene, NCIT:C25498
[Genome/Gene content] gene count genes 1357.78 (570 ~ 1981) OBI:0002568, gene
[Genome/Genome size] estimated genome size bp 1951030.63 (1049388.6 ~ 2610807.8) GENEPIO:0001561
[Genome/Genome size] info:genome size bp 1396342.78 (573281 ~ 2124342) GENEPIO:0001561
[Metabolism/Fermentation] fermentation: glucose boolean true GO:0006113, CHEBI:17234
[Metabolism/Fermentation] info:fermentation boolean true GO:0006113
View All Phenotype Traits

Taxonomy Lineage

Child Taxonomy

taxonomy name rank note
Atopostipes suicloacalis species ncbi_taxid: 180295 - Atopostipes suicloacalis(species); all_childs: 1121025
environmental samples no rank ncbi_taxid: 349264 - environmental samples(no rank); all_childs: 349265
unclassified Atopostipes no rank ncbi_taxid: 2643812 - unclassified Atopostipes(no rank); all_childs: 712165, 1070097, 1872652, 2939978
Candidatus Atopostipes pullistercoris species ncbi_taxid: 2838467 - Candidatus Atopostipes pullistercoris(species); all_childs:

Enzyme Proteins

protein id name ec_number function

Metabolites Taxonomy Source

Creating taxonomically-informed metabolome libraries