Atopomonas

ncbi_taxid: 2901416 - Atopomonas(genus); all_childs: 1429083, 2901419, 2919919

taxonomy name: Atopomonas (genus)
chinese name:
ancestor: Pseudomonadaceae (family)
ncbi taxonomy: 2901416
GTDB taxonomy:

Organism Phenotype Traits

Trait Unit Trait Value Ontology Terms
[Environmental preferences/Atmosphere] aerotolerant boolean true MICRO:0000502
[Environmental preferences/Atmosphere] obligate aerobic boolean true OMP:0000185
[Environmental preferences/pH] pH growth pH 7.35 (7.305075 ~ 7.3973646) OMP:0005008
[Environmental preferences/pH] pH maximum pH 9.64 (9.590226 ~ 9.691478) OMP:0005008
[Environmental preferences/pH] pH minimum pH 5.34 (5.331349 ~ 5.3409286) OMP:0005008
[Environmental preferences/Salinity] salinity growth % NaCl (w/v) 2.09 (1.9747657 ~ 2.2093227) OMP:0005013
[Environmental preferences/Salinity] salinity maximum % NaCl (w/v) 6.71 (6.618366 ~ 6.8065286) OMP:0005013
[Environmental preferences/Salinity] salinity minimum % NaCl (w/v) 0.24 (0.15240937 ~ 0.33754995) OMP:0005013
[Environmental preferences/Temperature] temperature growth Celsius 28.2 (26.37716 ~ 30) OMP:0005002
[Environmental preferences/Temperature] temperature maximum Celsius 36.62 (36.577625 ~ 36.665638) OMP:0005002
[Environmental preferences/Temperature] temperature minimum Celsius 6.83 (6.48527 ~ 7.178389) OMP:0005002
[Enzymes/Enzyme activity] enzyme activity: alkaline phosphatase (EC3.1.3.1) boolean true SNOMED:424017009, EC3.1.3.1
[Enzymes/Enzyme activity] enzyme activity: catalase (EC1.11.1.6) boolean true SNOMED:424017009, EC1.11.1.6
[Enzymes/Enzyme activity] enzyme activity: lipase boolean true SNOMED:424017009
[Enzymes/Enzyme activity] enzyme activity: ornithine decarboxylase (EC4.1.1.17) boolean true SNOMED:424017009, EC4.1.1.17
[Enzymes/Enzyme activity] enzyme activity: oxidase boolean true SNOMED:424017009
[Genome/Composition] coding density % 90.97 (90.79 ~ 91.14) SIO:001276, mesh:D059646, SNOMED:258755000
[Genome/Composition] GC percentage % 58.8 mesh:D001482
[Genome/Gene content] estimated gene count genes 3393.5 (3355.3 ~ 3431.7) OBI:0002568, gene, NCIT:C25498
[Genome/Gene content] gene count genes 3392.5 (3355 ~ 3430) OBI:0002568, gene
[Genome/Genome size] estimated genome size bp 3664654.25 (3645152.5 ~ 3684156) GENEPIO:0001561
[Genome/Genome size] info:genome size bp 3663551 (3644788 ~ 3682314) GENEPIO:0001561
[Metabolism/Aerobic growth] aerobic growth: chemoheterotrophy boolean true GO:0040007, PATO:0001455, ECOCORE:00000132
[Metabolism/Denitrification] denitrification: nitrate boolean true GO:0019333, CHEBI:17632
[Metabolism/Denitrification] denitrification: nitrous oxide boolean true GO:0019333, SNOMED:111132001
View All Phenotype Traits

Taxonomy Lineage

Child Taxonomy

taxonomy name rank note
Atopomonas hussainii species ncbi_taxid: 1429083 - Atopomonas hussainii(species); all_childs:
environmental samples no rank ncbi_taxid: 2901419 - environmental samples(no rank); all_childs:
Atopomonas sediminilitoris species ncbi_taxid: 2919919 - Atopomonas sediminilitoris(species); all_childs:

Enzyme Proteins

protein id name ec_number function

Metabolites Taxonomy Source

Creating taxonomically-informed metabolome libraries