Brachymonas

ncbi_taxid: 28219 - Brachymonas(genus); all_childs: 28220, 240505, 349917, 491919, 2621329, 3130163

taxonomy name: Brachymonas (genus)
chinese name:
ancestor: Comamonadaceae (family)
ncbi taxonomy: 28219
GTDB taxonomy:

Organism Phenotype Traits

Trait Unit Trait Value Ontology Terms
[Environmental preferences/Atmosphere] aerotolerant boolean true MICRO:0000502
[Environmental preferences/Atmosphere] capnophilic boolean No robust majority SNOMED:413748004
[Environmental preferences/Atmosphere] obligate aerobic boolean No robust majority OMP:0000185
[Environmental preferences/Atmosphere] oxygen preference factor aerobic MICRO:0000491
[Environmental preferences/pH] pH growth pH 7.43 (6.8897333 ~ 8.109686) OMP:0005008
[Environmental preferences/pH] pH maximum pH 9.34 (8 ~ 10.396379) OMP:0005008
[Environmental preferences/pH] pH minimum pH 5.23 (4.666485 ~ 6) OMP:0005008
[Environmental preferences/pH] pH preference factor alkaliphile OMP:0005008
[Environmental preferences/Salinity] salinity growth % NaCl (w/v) 0.84 (0 ~ 3.259514) OMP:0005013
[Environmental preferences/Salinity] salinity maximum % NaCl (w/v) 2.5 (0 ~ 8.810078) OMP:0005013
[Environmental preferences/Salinity] salinity minimum % NaCl (w/v) 0.44 (0 ~ 1.2030729) OMP:0005013
[Environmental preferences/Temperature] temperature growth Celsius 26.51 (18.684313 ~ 38.68056) OMP:0005002
[Environmental preferences/Temperature] temperature maximum Celsius 36.74 (29.889812 ~ 49.5371) OMP:0005002
[Environmental preferences/Temperature] temperature minimum Celsius 10.47 (5.0577645 ~ 20.78694) OMP:0005002
[Enzymes/Enzyme activity] enzyme activity: acid phosphatase (EC3.1.3.2) boolean true SNOMED:424017009, EC3.1.3.2
[Enzymes/Enzyme activity] enzyme activity: coagulase boolean No robust majority SNOMED:424017009
[Enzymes/Enzyme activity] enzyme activity: cytochrome oxidase (EC1.9.3.1) boolean true SNOMED:424017009, EC1.9.3.1
[Enzymes/Enzyme activity] enzyme activity: DNase boolean No robust majority SNOMED:424017009
[Enzymes/Enzyme activity] enzyme activity: lysine decarboxylase (EC4.1.1.18) boolean No robust majority SNOMED:424017009, EC4.1.1.18
[Genome/Composition] coding density % 87.23 (85.66 ~ 91.86) SIO:001276, mesh:D059646, SNOMED:258755000
[Genome/Composition] GC percentage % 57.37 (54.8 ~ 65.3) mesh:D001482
[Genome/Gene content] estimated gene count genes 2039.39 (1656.4 ~ 3422.1) OBI:0002568, gene, NCIT:C25498
[Genome/Gene content] gene count genes 1659.03 (1000 ~ 2727) OBI:0002568, gene
[Genome/Genome size] estimated genome size bp 2095083.28 (1696903 ~ 3190844.2) GENEPIO:0001561
[Genome/Genome size] info:genome size bp 1714514.2 (938727 ~ 2754828) GENEPIO:0001561
View All Phenotype Traits

Taxonomy Lineage

Child Taxonomy

taxonomy name rank note
Brachymonas denitrificans species ncbi_taxid: 28220 - Brachymonas denitrificans(species); all_childs: 1121117
Brachymonas petroleovorans species ncbi_taxid: 240505 - Brachymonas petroleovorans(species); all_childs: 398520
environmental samples no rank ncbi_taxid: 349917 - environmental samples(no rank); all_childs: 349918, 1718439
Brachymonas chironomi species ncbi_taxid: 491919 - Brachymonas chironomi(species); all_childs: 1121116
unclassified Brachymonas no rank ncbi_taxid: 2621329 - unclassified Brachymonas(no rank); all_childs: 220361, 220362, 220363, 220364, 220365, 220366, 220367, 220368, 220369, 220370, 336281, 398710, 398711, 398712, 398713, 497311, 1151459, 1302939, 1302940, 1302941, 1493907, 1577245, 1577248, 1936292, 3116489, 3416906
Brachymonas wangyanguii species ncbi_taxid: 3130163 - Brachymonas wangyanguii(species); all_childs:

Enzyme Proteins

protein id name ec_number function

Metabolites Taxonomy Source

Creating taxonomically-informed metabolome libraries