Atopococcus

ncbi_taxid: 269773 - Atopococcus(genus); all_childs: 269774, 1872676, 2624813

taxonomy name: Atopococcus (genus)
chinese name:
ancestor: Carnobacteriaceae (family)
ncbi taxonomy: 269773
GTDB taxonomy:

Organism Phenotype Traits

Trait Unit Trait Value Ontology Terms
[Environmental preferences/Atmosphere] aerotolerant boolean true MICRO:0000502
[Environmental preferences/Atmosphere] facultative anaerobe boolean true OMP:0000087
[Environmental preferences/Atmosphere] oxygen preference factor aerobic MICRO:0000491
[Environmental preferences/pH] pH growth pH 8.73 (8.393304 ~ 8.988112) OMP:0005008
[Environmental preferences/pH] pH maximum pH 9.81 (9.369095 ~ 10.162788) OMP:0005008
[Environmental preferences/pH] pH minimum pH 6.93 (6.7122703 ~ 7.5070567) OMP:0005008
[Environmental preferences/Salinity] salinity growth % NaCl (w/v) 6.71 (5.9861307 ~ 6.986823) OMP:0005013
[Environmental preferences/Salinity] salinity maximum % NaCl (w/v) 15.07 (9 ~ 18.690994) OMP:0005013
[Environmental preferences/Salinity] salinity minimum % NaCl (w/v) 2.76 (0.96532905 ~ 8) OMP:0005013
[Environmental preferences/Salinity] salinity preference factor halotolerant OMP:0005013
[Environmental preferences/Temperature] temperature growth Celsius 36.58 (28 ~ 45.00729) OMP:0005002
[Environmental preferences/Temperature] temperature maximum Celsius 49.93 (45 ~ 55.497437) OMP:0005002
[Environmental preferences/Temperature] temperature minimum Celsius 25.56 (20.819675 ~ 32.382328) OMP:0005002
[Environmental preferences/Temperature] temperature preference factor mesophilic OMP:0005002
[Enzymes/Enzyme activity] enzyme activity: acid phosphatase (EC3.1.3.2) boolean true SNOMED:424017009, EC3.1.3.2
[Enzymes/Enzyme activity] enzyme activity: alkaline phosphatase (EC3.1.3.1) boolean No robust majority SNOMED:424017009, EC3.1.3.1
[Enzymes/Enzyme activity] enzyme activity: alpha-galactosidase (EC3.2.1.22) boolean No robust majority SNOMED:424017009, EC3.2.1.22
[Enzymes/Enzyme activity] enzyme activity: alpha-glucosidase (EC3.2.1.20) boolean true SNOMED:424017009, EC3.2.1.20
[Enzymes/Enzyme activity] enzyme activity: arginine dihydrolase (EC3.5.3.6) boolean No robust majority SNOMED:424017009, EC3.5.3.6
[Enzymes/Enzyme activity] enzyme activity: coagulase boolean true SNOMED:424017009
[Enzymes/Enzyme activity] enzyme activity: pyrrolidonyl arylamidase (EC3.4.19.3) boolean No robust majority SNOMED:424017009, EC3.4.19.3
[Genome/Composition] coding density % 89.48 (86.46 ~ 90.96) SIO:001276, mesh:D059646, SNOMED:258755000
[Genome/Composition] GC percentage % 40.3 (36 ~ 45.6) mesh:D001482
[Genome/Gene content] estimated gene count genes 1719.23 (1283.3 ~ 2358.3) OBI:0002568, gene, NCIT:C25498
[Genome/Gene content] gene count genes 1401.43 (1002 ~ 2355) OBI:0002568, gene
View All Phenotype Traits

Taxonomy Lineage

Child Taxonomy

taxonomy name rank note
Atopococcus tabaci species ncbi_taxid: 269774 - Atopococcus tabaci(species); all_childs: 1121024
environmental samples no rank ncbi_taxid: 1872676 - environmental samples(no rank); all_childs: 1872677
unclassified Atopococcus no rank ncbi_taxid: 2624813 - unclassified Atopococcus(no rank); all_childs: 1872651

Enzyme Proteins

protein id name ec_number function

Metabolites Taxonomy Source

Creating taxonomically-informed metabolome libraries