Arhodomonas

ncbi_taxid: 2368 - Arhodomonas(genus); all_childs: 2369, 580976, 980519, 2621637

taxonomy name: Arhodomonas (genus)
chinese name:
ancestor: Ectothiorhodospiraceae (family)
ncbi taxonomy: 2368
GTDB taxonomy: 298658542

Organism Phenotype Traits

Trait Unit Trait Value Ontology Terms
[Environmental preferences/Atmosphere] aerotolerant boolean true MICRO:0000502
[Environmental preferences/Atmosphere] obligate aerobic boolean true OMP:0000185
[Environmental preferences/Atmosphere] oxygen preference factor aerobic MICRO:0000491
[Environmental preferences/pH] pH growth pH 7.74 OMP:0005008
[Environmental preferences/pH] pH maximum pH 8.98 (8 ~ 9.959142) OMP:0005008
[Environmental preferences/pH] pH minimum pH 5.94 (5.882226 ~ 6) OMP:0005008
[Environmental preferences/Salinity] salinity growth % NaCl (w/v) 6.98 OMP:0005013
[Environmental preferences/Salinity] salinity maximum % NaCl (w/v) 16.29 OMP:0005013
[Environmental preferences/Salinity] salinity minimum % NaCl (w/v) 3.18 OMP:0005013
[Environmental preferences/Salinity] salinity preference factor halophile OMP:0005013
[Environmental preferences/Temperature] temperature growth Celsius 35.48 (30 ~ 37) OMP:0005002
[Environmental preferences/Temperature] temperature maximum Celsius 46.22 OMP:0005002
[Environmental preferences/Temperature] temperature minimum Celsius 17.39 OMP:0005002
[Environmental preferences/Temperature] temperature preference factor mesophilic OMP:0005002
[Enzymes/Enzyme activity] enzyme activity: arginine dihydrolase (EC3.5.3.6) boolean true SNOMED:424017009, EC3.5.3.6
[Enzymes/Enzyme activity] enzyme activity: catalase (EC1.11.1.6) boolean true SNOMED:424017009, EC1.11.1.6
[Enzymes/Enzyme activity] enzyme activity: DNase boolean true SNOMED:424017009
[Enzymes/Enzyme activity] enzyme activity: lipase boolean true SNOMED:424017009
[Enzymes/Enzyme activity] enzyme activity: lysine decarboxylase (EC4.1.1.18) boolean No robust majority SNOMED:424017009, EC4.1.1.18
[Enzymes/Enzyme activity] enzyme activity: oxidase boolean true SNOMED:424017009
[Enzymes/Enzyme activity] enzyme activity: pyrrolidonyl arylamidase (EC3.4.19.3) boolean true SNOMED:424017009, EC3.4.19.3
[Enzymes/Enzyme activity] enzyme activity: urease (EC3.5.1.5) boolean true SNOMED:424017009, EC3.5.1.5
[Genome/Composition] coding density % 90.14 SIO:001276, mesh:D059646, SNOMED:258755000
[Genome/Composition] GC percentage % 69.4 mesh:D001482
[Genome/Gene content] estimated gene count genes 3550 OBI:0002568, gene, NCIT:C25498
View All Phenotype Traits

Taxonomy Lineage

Child Taxonomy

taxonomy name rank note
Arhodomonas aquaeolei species ncbi_taxid: 2369 - Arhodomonas aquaeolei(species); all_childs: 1121016
environmental samples no rank ncbi_taxid: 580976 - environmental samples(no rank); all_childs: 580977, 1500222
Arhodomonas recens species ncbi_taxid: 980519 - Arhodomonas recens(species); all_childs:
unclassified Arhodomonas no rank ncbi_taxid: 2621637 - unclassified Arhodomonas(no rank); all_childs: 169439, 492819, 492820, 492821, 581031, 1204712, 1204713, 1434880, 1491712, 1491713, 1813381, 1813382, 1813383, 1846201, 1872636, 2592072, 2679915, 3344194, 3415009, 3415667, 3425691

Enzyme Proteins

protein id name ec_number function

Metabolites Taxonomy Source

Creating taxonomically-informed metabolome libraries