Atlantibacter

ncbi_taxid: 1903434 - Atlantibacter(genus); all_childs: 565, 255519, 1903474, 2649394

taxonomy name: Atlantibacter (genus)
chinese name:
ancestor: Enterobacteriaceae (family)
ncbi taxonomy: 1903434
GTDB taxonomy:

Organism Phenotype Traits

Trait Unit Trait Value Ontology Terms
[Environmental preferences/Atmosphere] aerotolerant boolean true MICRO:0000502
[Environmental preferences/Atmosphere] facultative anaerobe boolean true OMP:0000087
[Environmental preferences/Atmosphere] oxygen preference factor facultative anaerobic MICRO:0000491
[Environmental preferences/pH] pH growth pH 7.09 (6.8297787 ~ 7.325679) OMP:0005008
[Environmental preferences/pH] pH maximum pH 9.44 (9.066559 ~ 9.905186) OMP:0005008
[Environmental preferences/pH] pH minimum pH 5.08 (4 ~ 5.2697954) OMP:0005008
[Environmental preferences/Salinity] salinity growth % NaCl (w/v) 2.65 (1.9520447 ~ 3.102898) OMP:0005013
[Environmental preferences/Salinity] salinity maximum % NaCl (w/v) 7.63 (6.5532684 ~ 9.089385) OMP:0005013
[Environmental preferences/Salinity] salinity minimum % NaCl (w/v) 0.08 (0 ~ 0.41281694) OMP:0005013
[Environmental preferences/Temperature] temperature growth Celsius 32.42 (25 ~ 37) OMP:0005002
[Environmental preferences/Temperature] temperature maximum Celsius 40.48 (39.09547 ~ 41.526546) OMP:0005002
[Environmental preferences/Temperature] temperature minimum Celsius 10.76 (5 ~ 30) OMP:0005002
[Enzymes/Enzyme activity] enzyme activity: acid phosphatase (EC3.1.3.2) boolean true SNOMED:424017009, EC3.1.3.2
[Enzymes/Enzyme activity] enzyme activity: alkaline phosphatase (EC3.1.3.1) boolean true SNOMED:424017009, EC3.1.3.1
[Enzymes/Enzyme activity] enzyme activity: beta-galactosidase (EC3.2.1.23) boolean true SNOMED:424017009, EC3.2.1.23
[Enzymes/Enzyme activity] enzyme activity: beta-glucosidase (EC3.2.1.21) boolean No robust majority SNOMED:424017009, EC3.2.1.21
[Enzymes/Enzyme activity] enzyme activity: catalase (EC1.11.1.6) boolean true SNOMED:424017009, EC1.11.1.6
[Enzymes/Enzyme activity] enzyme activity: gelatinase boolean No robust majority SNOMED:424017009
[Enzymes/Enzyme activity] enzyme activity: lysine decarboxylase (EC4.1.1.18) boolean No robust majority SNOMED:424017009, EC4.1.1.18
[Enzymes/Enzyme activity] enzyme activity: ornithine decarboxylase (EC4.1.1.17) boolean true SNOMED:424017009, EC4.1.1.17
[Enzymes/Enzyme activity] enzyme activity: pyrrolidonyl arylamidase (EC3.4.19.3) boolean No robust majority SNOMED:424017009, EC3.4.19.3
[Genome/Composition] coding density % 88.95 (86.74 ~ 90.68) SIO:001276, mesh:D059646, SNOMED:258755000
[Genome/Composition] GC percentage % 55.14 (54 ~ 56.9) mesh:D001482
[Genome/Gene content] estimated gene count genes 4393.36 (3926 ~ 4876) OBI:0002568, gene, NCIT:C25498
[Genome/Gene content] gene count genes 3977.93 (2603 ~ 4876) OBI:0002568, gene
View All Phenotype Traits

Taxonomy Lineage

Child Taxonomy

taxonomy name rank note
Atlantibacter hermannii species ncbi_taxid: 565 - Atlantibacter hermannii(species); all_childs: 1115512
Atlantibacter subterraneus species ncbi_taxid: 255519 - Atlantibacter subterraneus(species); all_childs: 1123238
environmental samples no rank ncbi_taxid: 1903474 - environmental samples(no rank); all_childs: 1903475
unclassified Atlantibacter no rank ncbi_taxid: 2649394 - unclassified Atlantibacter(no rank); all_childs: 1903473, 2587036, 3041781

Enzyme Proteins

protein id name ec_number function

Metabolites Taxonomy Source

Creating taxonomically-informed metabolome libraries