Clostridium baratii

ncbi_taxid: 1561 - Clostridium baratii(species); all_childs: 1415775

taxonomy name: Clostridium baratii (species)
chinese name:
ancestor: Clostridium (genus)
ncbi taxonomy: 1561
GTDB taxonomy:

Organism Phenotype Traits

Trait Unit Trait Value Ontology Terms
[Environmental preferences/Atmosphere] obligate anaerobic boolean true OMP:0000184
[Environmental preferences/Atmosphere] oxygen preference factor aerobic MICRO:0000491
[Environmental preferences/pH] pH growth pH 7.02 (6.7869368 ~ 7.319536) OMP:0005008
[Environmental preferences/pH] pH maximum pH 8.45 (8.050814 ~ 8.886282) OMP:0005008
[Environmental preferences/pH] pH minimum pH 5.62 (5.4430017 ~ 5.7778864) OMP:0005008
[Environmental preferences/Salinity] salinity growth % NaCl (w/v) 4.48 (3.3709579 ~ 5.0656624) OMP:0005013
[Environmental preferences/Salinity] salinity maximum % NaCl (w/v) 9.43 (8.126706 ~ 10.54789) OMP:0005013
[Environmental preferences/Salinity] salinity minimum % NaCl (w/v) 1.68 (1.0969476 ~ 2.4504716) OMP:0005013
[Environmental preferences/Temperature] temperature growth Celsius 37 OMP:0005002
[Environmental preferences/Temperature] temperature maximum Celsius 41.79 (40.04947 ~ 48.03635) OMP:0005002
[Environmental preferences/Temperature] temperature minimum Celsius 18.27 (16.201979 ~ 27.203493) OMP:0005002
[Enzymes/Enzyme activity] enzyme activity: alkaline phosphatase (EC3.1.3.1) boolean true SNOMED:424017009, EC3.1.3.1
[Enzymes/Enzyme activity] enzyme activity: arginine dihydrolase (EC3.5.3.6) boolean true SNOMED:424017009, EC3.5.3.6
[Enzymes/Enzyme activity] enzyme activity: beta-glucosidase (EC3.2.1.21) boolean true SNOMED:424017009, EC3.2.1.21
[Enzymes/Enzyme activity] enzyme activity: coagulase boolean No robust majority SNOMED:424017009
[Enzymes/Enzyme activity] enzyme activity: DNase boolean true SNOMED:424017009
[Enzymes/Enzyme activity] enzyme activity: pyrrolidonyl arylamidase (EC3.4.19.3) boolean true SNOMED:424017009, EC3.4.19.3
[Genome/Composition] coding density % 88.12 (86.42 ~ 91.92) SIO:001276, mesh:D059646, SNOMED:258755000
[Genome/Composition] GC percentage % 28.1 (27.4 ~ 30.5) mesh:D001482
[Genome/Gene content] estimated gene count genes 2975.05 (1426.5 ~ 3353.8) OBI:0002568, gene, NCIT:C25498
[Genome/Gene content] gene count genes 2598.34 (799 ~ 3171) OBI:0002568, gene
[Genome/Genome size] estimated genome size bp 3092449.77 (1437566.5 ~ 3437709.5) GENEPIO:0001561
[Genome/Genome size] info:genome size bp 2704240.6 (805181 ~ 3338630) GENEPIO:0001561
[Genome/Pangenome] pangenome openness score 0.36 None
[Genome/Population diversity] intra species nucleotide diversity % mesh:D014644
View All Phenotype Traits

Taxonomy Lineage

Child Taxonomy

taxonomy name rank note
Clostridium baratii str. Sullivan strain ncbi_taxid: 1415775 - Clostridium baratii str. Sullivan(strain); all_childs:

Enzyme Proteins

protein id name ec_number function

Metabolites Taxonomy Source

Creating taxonomically-informed metabolome libraries