Atopobium

ncbi_taxid: 1380 - Atopobium(genus); all_childs: 1381, 39487, 135021, 1393034, 2094145, 2643817

taxonomy name: Atopobium (genus)
chinese name:
ancestor: Atopobiaceae (family)
ncbi taxonomy: 1380
GTDB taxonomy:

Organism Phenotype Traits

Trait Unit Trait Value Ontology Terms
[Environmental preferences/Atmosphere] facultative anaerobe boolean No robust majority OMP:0000087
[Environmental preferences/Atmosphere] obligate anaerobic boolean true OMP:0000184
[Environmental preferences/Atmosphere] oxygen preference factor obligate anaerobic MICRO:0000491
[Environmental preferences/pH] pH growth pH 7.15 (5.9150877 ~ 7.875586) OMP:0005008
[Environmental preferences/pH] pH maximum pH 8.82 (5.8 ~ 9.641969) OMP:0005008
[Environmental preferences/pH] pH minimum pH 5.41 (3.5270593 ~ 6.377082) OMP:0005008
[Environmental preferences/Salinity] salinity growth % NaCl (w/v) 0.91 (0 ~ 3.9715297) OMP:0005013
[Environmental preferences/Salinity] salinity maximum % NaCl (w/v) 2.47 (0 ~ 9.171068) OMP:0005013
[Environmental preferences/Salinity] salinity minimum % NaCl (w/v) 0.92 (0 ~ 2.8331668) OMP:0005013
[Environmental preferences/Temperature] temperature growth Celsius 22.48 (14.583933 ~ 37) OMP:0005002
[Environmental preferences/Temperature] temperature maximum Celsius 29.55 (23.34507 ~ 40.450844) OMP:0005002
[Environmental preferences/Temperature] temperature minimum Celsius 7.21 (0.72497785 ~ 30) OMP:0005002
[Environmental preferences/Temperature] temperature preference factor mesophilic OMP:0005002
[Enzymes/Enzyme activity] enzyme activity: acid phosphatase (EC3.1.3.2) boolean true SNOMED:424017009, EC3.1.3.2
[Enzymes/Enzyme activity] enzyme activity: alanine arylamidase (EC3.4.11.2) boolean No robust majority SNOMED:424017009, EC3.4.11.2
[Enzymes/Enzyme activity] enzyme activity: alpha-glucosidase (EC3.2.1.20) boolean No robust majority SNOMED:424017009, EC3.2.1.20
[Enzymes/Enzyme activity] enzyme activity: arginine dihydrolase (EC3.5.3.6) boolean No robust majority SNOMED:424017009, EC3.5.3.6
[Enzymes/Enzyme activity] enzyme activity: coagulase boolean true SNOMED:424017009
[Enzymes/Enzyme activity] enzyme activity: pyrrolidonyl arylamidase (EC3.4.19.3) boolean No robust majority SNOMED:424017009, EC3.4.19.3
[Genome/Composition] coding density % 89.43 (76.92 ~ 91.72) SIO:001276, mesh:D059646, SNOMED:258755000
[Genome/Composition] GC percentage % 49.76 (42.8 ~ 66.4) mesh:D001482
[Genome/Gene content] estimated gene count genes 1432 (865.2 ~ 3279.7) OBI:0002568, gene, NCIT:C25498
[Genome/Gene content] gene count genes 1022.18 (537 ~ 3222) OBI:0002568, gene
[Genome/Genome size] estimated genome size bp 1564995.28 (1093707.1 ~ 3093901) GENEPIO:0001561
[Genome/Genome size] info:genome size bp 1120668.64 (639022 ~ 3004013) GENEPIO:0001561
View All Phenotype Traits

Taxonomy Lineage

Child Taxonomy

taxonomy name rank note
Atopobium minutum species ncbi_taxid: 1381 - Atopobium minutum(species); all_childs: 997872
Atopobium fossor species ncbi_taxid: 39487 - Atopobium fossor(species); all_childs: 1121023
environmental samples no rank ncbi_taxid: 135021 - environmental samples(no rank); all_childs: 135022, 274587, 1920731
Atopobium deltae species ncbi_taxid: 1393034 - Atopobium deltae(species); all_childs:
Atopobium massiliense species ncbi_taxid: 2094145 - Atopobium massiliense(species); all_childs:
unclassified Atopobium no rank ncbi_taxid: 2643817 - unclassified Atopobium(no rank); all_childs: 244227, 477268, 519019, 712156, 712157, 712158, 712159, 712160, 712161, 712162, 712163, 712164, 873177, 936550, 936551, 936552, 1111121, 1190620, 1200630, 1219586, 1219587, 1219588, 1219589, 1219590, 1219591, 1287016, 1287017, 1287018, 1347142, 1739402, 1872650, 1946064, 1946065, 1946066, 1946067, 1946068, 1946069, 1946070, 1946071, 1946072, 1946073, 1946074, 1946075, 1946076, 1946077, 1946078, 1946079, 1946080, 1946081, 1946082

Enzyme Proteins

protein id name ec_number function

Metabolites Taxonomy Source

Creating taxonomically-informed metabolome libraries