Rhodomicrobium vannielii

ncbi_taxid: 1069 - Rhodomicrobium vannielii(species); all_childs: 648757

taxonomy name: Rhodomicrobium vannielii (species)
chinese name:
ancestor: Rhodomicrobium (genus)
ncbi taxonomy: 1069
GTDB taxonomy:

Organism Phenotype Traits

Trait Unit Trait Value Ontology Terms
[Environmental preferences/Atmosphere] aerotolerant boolean true MICRO:0000502
[Environmental preferences/Atmosphere] capnophilic boolean true SNOMED:413748004
[Environmental preferences/Atmosphere] obligate aerobic boolean No robust majority OMP:0000185
[Environmental preferences/Atmosphere] oxygen preference factor aerobic MICRO:0000491
[Environmental preferences/pH] pH growth pH 7.11 (7.070925 ~ 7.124444) OMP:0005008
[Environmental preferences/pH] pH maximum pH 9.31 (9.159313 ~ 9.434031) OMP:0005008
[Environmental preferences/pH] pH minimum pH 5.16 (5.093392 ~ 5.2088046) OMP:0005008
[Environmental preferences/Salinity] salinity growth % NaCl (w/v) 0.23 (0 ~ 0.46234062) OMP:0005013
[Environmental preferences/Salinity] salinity maximum % NaCl (w/v) 1.5 (1.1232678 ~ 2.0881155) OMP:0005013
[Environmental preferences/Salinity] salinity minimum % NaCl (w/v) 0.12 (0 ~ 0.3655589) OMP:0005013
[Environmental preferences/Temperature] temperature growth Celsius 28 OMP:0005002
[Environmental preferences/Temperature] temperature maximum Celsius 40.1 (39.50166 ~ 41.21749) OMP:0005002
[Environmental preferences/Temperature] temperature minimum Celsius 16.11 (14.862335 ~ 18.035322) OMP:0005002
[Environmental preferences/Temperature] temperature preference factor mesophilic OMP:0005002
[Enzymes/Enzyme activity] enzyme activity: arginine dihydrolase (EC3.5.3.6) boolean true SNOMED:424017009, EC3.5.3.6
[Enzymes/Enzyme activity] enzyme activity: catalase (EC1.11.1.6) boolean true SNOMED:424017009, EC1.11.1.6
[Enzymes/Enzyme activity] enzyme activity: coagulase boolean true SNOMED:424017009
[Enzymes/Enzyme activity] enzyme activity: oxidase boolean true SNOMED:424017009
[Enzymes/Enzyme activity] enzyme activity: pyrrolidonyl arylamidase (EC3.4.19.3) boolean true SNOMED:424017009, EC3.4.19.3
[Genome/Composition] coding density % 86.2 (86.09 ~ 86.38) SIO:001276, mesh:D059646, SNOMED:258755000
[Genome/Composition] GC percentage % 63.13 (62.2 ~ 65) mesh:D001482
[Genome/Gene content] estimated gene count genes 4162.13 (3628 ~ 5187.4) OBI:0002568, gene, NCIT:C25498
[Genome/Gene content] gene count genes 4153.67 (3628 ~ 5162) OBI:0002568, gene
[Genome/Genome size] estimated genome size bp 4556879.5 (3849085 ~ 5807084.5) GENEPIO:0001561
[Genome/Genome size] info:genome size bp 4547394.67 (3849085 ~ 5778630) GENEPIO:0001561
View All Phenotype Traits

Taxonomy Lineage

Child Taxonomy

taxonomy name rank note
Rhodomicrobium vannielii ATCC 17100 strain ncbi_taxid: 648757 - Rhodomicrobium vannielii ATCC 17100(strain); all_childs:

Enzyme Proteins

protein id name ec_number function

Metabolites Taxonomy Source

Creating taxonomically-informed metabolome libraries