ALKBH2
K10859 ALKBH2; DNA oxidative demethylase [EC:1.14.11.33]
Protein Function: DNA oxidative demethylase [EC:1.14.11.33]
DBLinks
- KEGG: K10859
- EC Number: 1.14.11.33
Proteins
| protein id | name | function | taxonomy source |
|---|---|---|---|
| A0A067GFU0 | A0A067GFU0_CITSI | Fe2OG dioxygenase domain-containing protein | Citrus sinensis |
| A0A067GG24 | A0A067GG24_CITSI | Fe2OG dioxygenase domain-containing protein | Citrus sinensis |
| A0A067GT20 | A0A067GT20_CITSI | Fe2OG dioxygenase domain-containing protein | Citrus sinensis |
| A0A067GTD8 | A0A067GTD8_CITSI | Alpha-ketoglutarate-dependent dioxygenase AlkB-like domain-containing protein | Citrus sinensis |
| A0A0E0HP55 | A0A0E0HP55_ORYNI | Fe2OG dioxygenase domain-containing protein | Oryza nivara |
| A0A3B6SB84 | A0A3B6SB84_WHEAT | Fe2OG dioxygenase domain-containing protein | Triticum aestivum |
| A0A3B6SC60 | A0A3B6SC60_WHEAT | Fe2OG dioxygenase domain-containing protein | Triticum aestivum |
| A0A3B6TH76 | A0A3B6TH76_WHEAT | Fe2OG dioxygenase domain-containing protein | Triticum aestivum |
| A0A9R1M4U0 | A0A9R1M4U0_WHEAT | Fe2OG dioxygenase domain-containing protein | Triticum aestivum |
| A0A9R1M4W1 | A0A9R1M4W1_WHEAT | Fe2OG dioxygenase domain-containing protein | Triticum aestivum |
Reactions
| reaction id | name | note |
|---|---|---|
| BioCyc:RXN0-7484 | CPD0-2726 + 2-KETOGLUTARATE + OXYGEN-MOLECULE --> DNA-Adenines + CPD-21542 + CARBON-DIOXIDE + SUC | |
| BioCyc:RXN0-986 | N1-ETHYLADENINE-IN-DNA + 2-KETOGLUTARATE + OXYGEN-MOLECULE --> DNA-Adenines + ACETALD + SUC + CARBON-DIOXIDE | AlkB catalyzes repair of DNA lesions caused by SN2 methylating compounds, rather than lesions caused by SN1 methylating compounds or ionizing radiation |CITS: [10950872]|. AlkB preferentially binds to and repairs methylation lesions in single-stranded DNA rather than double-stranded DNA, suggesting that AlkB repair activity may be specific for the single-stranded DNA present during transcription and DNA replication |CITS: [10950872]|. AlkB also catalyzes repair of methylated RNA |CITS: [12594517]|. |
| BioCyc:RXN-18739 | CPD-20035 + 2-KETOGLUTARATE + OXYGEN-MOLECULE --> DAMP + FORMALDEHYDE + SUC + CARBON-DIOXIDE | |
| BioCyc:RXN0-7280 | CPD-20036 + 2-KETOGLUTARATE + OXYGEN-MOLECULE --> DATP + FORMALDEHYDE + SUC + CARBON-DIOXIDE | |
| BioCyc:RXN-18737 | an-Nsup1sup-methyladenine-in-DNA + 2-KETOGLUTARATE + OXYGEN-MOLECULE --> DNA-Adenines + CARBON-DIOXIDE + FORMALDEHYDE + SUC | |
| BioCyc:RXN0-984 | N1-METHYLADENINE + OXYGEN-MOLECULE + 2-KETOGLUTARATE --> ADENINE + CARBON-DIOXIDE + FORMALDEHYDE + SUC | AlkB preferentially binds to and repairs methylation lesions in single-stranded DNA rather than double-stranded DNA, suggesting that AlkB repair activity may be specific for the single-stranded DNA present during transcription and DNA replication |CITS: [10950872]|. AlkB also catalyzes repair of methylated RNA |CITS: [12594517]|. AlkB-mediated repair involves hydroxylation of methylation lession coupled to decarboxylation of α-ketoglutarate, an unusual repair mechanism that regenerates the intact, unmethylated base |CITS: [12226667], [12226668]|. |
| BioCyc:RXN-18738 | an-Nsup3sup-methylcytosine-in-DNA + 2-KETOGLUTARATE + OXYGEN-MOLECULE --> DNA-Cytosines + CARBON-DIOXIDE + FORMALDEHYDE + SUC + PROTON | |
| BioCyc:RXN-12353 | Methylated-DNA-Bases + OXYGEN-MOLECULE + 2-KETOGLUTARATE --> Nucleobases-in-DNA + CARBON-DIOXIDE + FORMALDEHYDE + SUC | |
| Rhea:RHEA:30300 | a methylated nucleobase within DNA + 2-oxoglutarate + O2 => a nucleobase within DNA + formaldehyde + succinate + CO2 | |
| Rhea:RHEA:30301 | a nucleobase within DNA + formaldehyde + succinate + CO2 => a methylated nucleobase within DNA + 2-oxoglutarate + O2 |