Pathways Knowlegdes
Biological pathway database
| Pathway | DOIs | Note |
|---|---|---|
| L-arabinose degradation II Accession ID: BioCyc:META_PWY-5515 |
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de Groot MJL, Prathumpai W, Visser J, Ruijter GJG. Metabolic Control Analysis of Aspergillus niger |
| vitamin B6 degradation Accession ID: BioCyc:META_PWY-5499 |
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Yokochi N, Nishimura S, Yoshikane Y, Ohnishi K, Yagi T. Identification of a new tetrameric pyridoxal 4-dehydrogenase as the second enzyme in the degradation pathway for pyridoxine in a nitrogen-fixing symbiotic bacterium, Mesorhizobium loti. Archives of Biochemistry and Biophysics. 2006 Aug;452(1):1–8. doi: 10.1016/j.abb.2006.06.002.; Burg RW, Rodwell VW, Snell EE. Bacterial Oxidation of Vitamin B6. Journal of Biological Chemistry. 1960 Apr;235(4):1164–9. doi: 10.1016/s0021-9258(18)69498-0. |
| wax esters biosynthesis I Accession ID: BioCyc:META_PWY-5884 |
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Lassner MW, Lardizabal K, Metz JG. A jojoba beta-Ketoacyl-CoA synthase cDNA complements the canola fatty acid elongation mutation in transgenic plants. Plant Cell. 1996 Feb;8(2):281–92. PMID: 8742713; PMCID: PMC161098. |
| CO2 fixation into oxaloacetate (anaplerotic) Accession ID: BioCyc:META_PWYQT-4429 |
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Sánchez R, Flores A, Cejudo FJ. Arabidopsis phosphoenolpyruvate carboxylase genes encode immunologically unrelated polypeptides and are differentially expressed in response to drought and salt stress. Planta. 2006 Apr;223(5):901–9. doi: 10.1007/s00425-005-0144-5. PMID: 16283377.; Murakami H, Sly WS. Purification and characterization of human salivary carbonic anhydrase. Journal of Biological Chemistry. 1987 Jan;262(3):1382–8. doi: 10.1016/s0021-9258(19)75797-4. |
| salicylate glucosides biosynthesis III Accession ID: BioCyc:META_PWY-6624 |
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Dean JV, Delaney SP. Metabolism of salicylic acid in wild-type, ugt74f1 and ugt74f2 glucosyltransferase mutants of Arabidopsis thaliana. Physiologia Plantarum. 2008 Jan 31;132(4):417–25. doi: 10.1111/j.1399-3054.2007.01041.x.; Suzuki H, Hayase H, Nakayama A, Yamaguchi I, Asami T, Nakajima M. Identification and characterization of an Ipomoea nil glucosyltransferase which metabolizes some phytohormones. Biochemical and Biophysical Research Communications. 2007 Oct;361(4):980–6. doi: 10.1016/j.bbrc.2007.07.147.; Song JT. Induction of a Salicylic Acid Glucosyltransferase, AtSGT1, Is an Early Disease Response in Arabidopsis thaliana. Molecules and Cells. 2006 Oct;22(2):233–8. doi: 10.1016/s1016-8478(23)17415-2.; Lee H, Raskin I. Purification, Cloning, and Expression of a Pathogen Inducible UDP-glucose:Salicylic Acid Glucosyltransferase from Tobacco. Journal of Biological Chemistry. 1999 Dec;274(51):36637–42. doi: 10.1074/jbc.274.51.36637.; Lee HI, Raskin I. Glucosylation of Salicylic Acid in Nicotiana tabacum Cv. Xanthi-nc. Phytopathology. 1998 Jul;88(7):692–7. doi: 10.1094/phyto.1998.88.7.692. PMID: 18944942. |
| phthiocerol biosynthesis Accession ID: BioCyc:META_PWY-7741 |
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Siméone R, Léger M, Constant P, Malaga W, Marrakchi H, Daffé M, Guilhot C, Chalut C. Delineation of the roles of FadD22, FadD26 and FadD29 in the biosynthesis of phthiocerol dimycocerosates and related compounds in Mycobacterium tuberculosis. The FEBS Journal. 2010 Jun;277(12):2715–25. doi: 10.1111/j.1742-4658.2010.07688.x.; Azad AK, Sirakova TD, Fernandes ND, Kolattukudy PE. Gene Knockout Reveals a Novel Gene Cluster for the Synthesis of a Class of Cell Wall Lipids Unique to Pathogenic Mycobacteria. Journal of Biological Chemistry. 1997 Jul;272(27):16741–5. doi: 10.1074/jbc.272.27.16741. |
| dimethylsulfoniopropanoate degradation II (cleavage) Accession ID: BioCyc:META_PWY-6056 |
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Todd JD, Rogers R, Li YG, Wexler M, Bond PL, Sun L, Curson ARJ, Malin G, Steinke M, Johnston AWB. Structural and Regulatory Genes Required to Make the Gas Dimethyl Sulfide in Bacteria. Science. 2007 Feb 02;315(5812):666–9. doi: 10.1126/science.1135370. |
| daidzein conjugates interconversion Accession ID: BioCyc:META_PWY-2343 |
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Hsieh MC, Graham TL. Partial purification and characterization of a soybean beta-glucosidase with high specific activity towards isoflavone conjugates. Phytochemistry. 2001 Dec;58(7):995–1005. doi: 10.1016/s0031-9422(01)00380-6. PMID: 11730862.; Hinderer W, Köster J, Barz W. Purification and properties of a specific isoflavone 7-O-glucoside-6?-malonate malonylesterase from roots of chickpea (Cicer arietinum L.). Archives of Biochemistry and Biophysics. 1986 Aug;248(2):570–8. doi: 10.1016/0003-9861(86)90510-2.; Koester J, Bussmann R, Barz W. Malonyl-coenzyme A:Isoflavone 7-O-glucoside-6?-O-malonyltransferase from roots of chick pea (Cicer arietinum L.). Archives of Biochemistry and Biophysics. 1984 Nov;234(2):513–21. doi: 10.1016/0003-9861(84)90298-4.; Matern U, Feser C, Hammer D. Further characterization and regulation of malonyl-coenzyme A: Flavonoid glucoside malonyltransferases from parsley cell suspension cultures. Archives of Biochemistry and Biophysics. 1983 Oct;226(1):206–17. doi: 10.1016/0003-9861(83)90286-2.; Köster J, Barz W. UDP-glucose:Isoflavone 7-O-glucosyltransferase from roots of chick pea (Cicer arietinum L.). Archives of Biochemistry and Biophysics. 1981 Nov;212(1):98–104. doi: 10.1016/0003-9861(81)90347-7.; Hósel W, Barz W. Beta-Glucosidases from Cicer arietinum L. Purification and Properties of isoflavone-7-O-glucoside-specific beta-glucosidases. Eur J Biochem. 1975 Sep 15;57(2):607–16. doi: 10.1111/j.1432-1033.1975.tb02336.x. PMID: 240725.; Davenport HE, Dupont MS. The enzymic hydrolysis of malonated flavone glycosides. Biochem J. 1972 Sep;129(2):18P–19P. PMID: 4643301; PMCID: PMC1174128. |
| superpathway of L-phenylalanine biosynthesis Accession ID: BioCyc:META_PWY-6628 |
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Weigent DA, Nester EW. Purification and properties of two aromatic aminotransferases in Bacillus subtilis. Journal of Biological Chemistry. 1976 Nov;251(22):6974–80. doi: 10.1016/s0021-9258(17)32929-0. |
| arsenite oxidation II (respiratory) Accession ID: BioCyc:META_PWY-7429 |
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Silver S, Phung LT. Genes and Enzymes Involved in Bacterial Oxidation and Reduction of Inorganic Arsenic. Appl Environ Microbiol. 2005 Feb;71(2):599–608. doi: 10.1128/aem.71.2.599-608.2005. |
| pinosylvin metabolism Accession ID: BioCyc:META_PWY-5045 |
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Seppänen SK, Syrjälä L, von Weissenberg K, Teeri TH, Paajanen L, Pappinen A. Antifungal activity of stilbenes in in vitro bioassays and in transgenic Populus expressing a gene encoding pinosylvin synthase. Plant Cell Rep. 2004 Mar;22(8):584–93. doi: 10.1007/s00299-003-0728-0. PMID: 14714142.; Kodan A, Kuroda H, Sakai F. A stilbene synthase from Japanese red pine ( Pinus densiflora ): Implications for phytoalexin accumulation and down-regulation of flavonoid biosynthesis. Proc. Natl. Acad. Sci. U.S.A. 2002 Mar 05;99(5):3335–9. doi: 10.1073/pnas.042698899.; Yamazaki Y, Suh DY, Sitthithaworn W, Ishiguro K, Kobayashi Y, Shibuya M, Ebizuka Y, Sankawa U. Diverse chalcone synthase superfamily enzymes from the most primitive vascular plant, Psilotum nudum. Planta. 2001 Nov;214(1):75–84. doi: 10.1007/s004250100586. PMID: 11762173.; Chiron H, Drouet A, Claudot AC, Eckerskorn C, Trost M, Heller W, Ernst D, Sandermann H. Molecular cloning and functional expression of a stress-induced multifunctional O-methyltransferase with pinosylvin methyltransferase activity from Scots pine (Pinus sylvestris L.). Plant Mol Biol. 2000 Dec;44(6):733–45. doi: 10.1023/a:1026507707186. PMID: 11202436.; Chiron H, Drouet A, Lieutier F, Payer HD, Ernst D, Sandermann H. Gene induction of stilbene biosynthesis in Scots pine in response to ozone treatment, wounding, and fungal infection. Plant Physiol. 2000 Oct;124(2):865–72. PMID: 11027734; PMCID: PMC59190.; Preisig-Müller R, Schwekendiek A, Brehm I, Reif HJ, Kindl H. Characterization of a pine multigene family containing elicitor-responsive stilbene synthase genes. Plant Mol Biol. 1999 Jan;39(2):221–9. doi: 10.1023/a:1006163030646. PMID: 10080690.; Tropf S, Kärcher B, Schröder G, Schröder J. Reaction mechanisms of homodimeric plant polyketide synthase (stilbenes and chalcone synthase). A single active site for the condensing reaction is sufficient for synthesis of stilbenes, chalcones, and 6'-deoxychalcones. J Biol Chem. 1995 Apr 07;270(14):7922–8. doi: 10.1074/jbc.270.14.7922. PMID: 7713888.; Raiber S, Schröder G, Schröder J. Molecular and enzymatic characterization of two stilbene synthases from Eastern white pine (Pinus strobus). A single Arg/His difference determines the activity and the pH dependence of the enzymes. FEBS Lett. 1995 Mar 20;361(2-3):299–302. doi: 10.1016/0014-5793(95)00199-j. PMID: 7698342.; Tropf S, Lanz T, Rensing SA, Schröder J, Schröder G. Evidence that stilbene synthases have developed from chalcone synthases several times in the course of evolution. Journal of Molecular Evolution. 1994 Jun;38(6):610–8. doi: 10.1007/bf00175881.; Schanz S, Schröder G, Schröder J. Stilbene synthase from Scots pine (Pinus sylvestris). FEBS Lett. 1992 Nov 16;313(1):71–4. doi: 10.1016/0014-5793(92)81187-q. PMID: 1426272.; Schwekendiek A, Pfeffer G, Kindl H. Pine stilbene synthase cDNA, a tool for probing environmental stress. FEBS Lett. 1992 Apr 13;301(1):41–4. doi: 10.1016/0014-5793(92)80206-v. PMID: 1451785.; Fliegmann J, Schröder G, Schanz S, Britsch L, Schröder J. Molecular analysis of chalcone and dihydropinosylvin synthase from Scots pine (Pinus sylvestris), and differential regulation of these and related enzyme activities in stressed plants. Plant Mol Biol. 1992 Feb;18(3):489–503. doi: 10.1007/bf00040665. PMID: 1536925.; Lanz T, Tropf S, Marner FJ, Schröder J, Schröder G. The role of cysteines in polyketide synthases. Site-directed mutagenesis of resveratrol and chalcone synthases, two key enzymes in different plant-specific pathways. Journal of Biological Chemistry. 1991 May;266(15):9971–6. doi: 10.1016/s0021-9258(18)92914-5. |
| B series fagopyritols biosynthesis Accession ID: BioCyc:META_PWY-5379 |
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Cid MB, Alfonso F, Martín-Lomas M. Synthesis of fagopyritols A1 and B1 from D-chiro-inositol. Carbohydr Res. 2004 Sep 13;339(13):2303–7. doi: 10.1016/j.carres.2004.06.021. PMID: 15337459.; Steadman KJ, Fuller DJ, Obendorf RL. Purification and molecular structure of two digalactosyl D-chiro-inositols and two trigalactosyl D-chiro-inositols from buckwheat seeds. Carbohydr Res. 2001 Mar 09;331(1):19–25. doi: 10.1016/s0008-6215(00)00320-7. PMID: 11284502.; Obendorf RL, Steadman KJ, Fuller DJ, Horbowicz M, Lewis BA. Molecular structure of fagopyritol A1 (O-alpha-D-galactopyranosyl-(1 --> 3)-D-chiro-inositol) by NMR. Carbohydr Res. 2000 Oct 06;328(4):623–7. doi: 10.1016/s0008-6215(00)00133-6. PMID: 11093720.; Horbowicz M, Brenac P, Obendorf RL. Fagopyritol B1, O-alpha-D-galactopyranosyl-(1-->2)-D-chiro-inositol, a galactosyl cyclitol in maturing buckwheat seeds associated with desiccation tolerance. Planta. 1998 May;205(1):1–11. doi: 10.1007/s004250050290. PMID: 9599801. |
| aerobic respiration II (cytochrome c) (yeast) Accession ID: BioCyc:META_PWY-7279 |
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Feng Y, Li W, Li J, Wang J, Ge J, Xu D, Liu Y, Wu K, Zeng Q, Wu JW, Tian C, Zhou B, Yang M. Structural insight into the type-II mitochondrial NADH dehydrogenases. Nature. 2012 Nov 15;491(7424):478–82. doi: 10.1038/nature11541. PMID: 23086143.; Smith PM, Fox JL, Winge DR. Reprint of: Biogenesis of the cytochrome bc1 complex and role of assembly factors. Biochimica et Biophysica Acta (BBA) - Bioenergetics. 2012 Jun;1817(6):872–82. doi: 10.1016/j.bbabio.2012.03.003.; Maréchal A, Meunier B, Lee D, Orengo C, Rich PR. Yeast cytochrome c oxidase: A model system to study mitochondrial forms of the haem–copper oxidase superfamily. Biochimica et Biophysica Acta (BBA) - Bioenergetics. 2012 Apr;1817(4):620–8. doi: 10.1016/j.bbabio.2011.08.011.; Zara V, Conte L, Trumpower BL. Biogenesis of the yeast cytochrome bc1 complex. Biochimica et Biophysica Acta (BBA) - Molecular Cell Research. 2009 Jan;1793(1):89–96. doi: 10.1016/j.bbamcr.2008.04.011.; Hunte C, Solmaz S, Palsdóttir H, Wenz T. A structural perspective on mechanism and function of the cytochrome bc (1) complex. Results Probl Cell Differ. 2008;45():253–78. doi: 10.1007/400_2007_042. PMID: 18038116.; Yagi T, Seo BB, Nakamaru-Ogiso E, Marella M, Barber-Singh J, Yamashita T, Kao MC, Matsuno-Yagi A. Can a single subunit yeast NADH dehydrogenase (Ndi1) remedy diseases caused by respiratory complex I defects? Rejuvenation Res. 2006;9(2):191–7. doi: 10.1089/rej.2006.9.191. PMID: 16706641.; Barnett JA. A history of research on yeasts 6: the main respiratory pathway. Yeast. 2003 Sep;20(12):1015–44. doi: 10.1002/yea.1021. PMID: 12961751.; Påhlman I, Larsson C, Averét N, Bunoust O, Boubekeur S, Gustafsson L, Rigoulet M. Kinetic Regulation of the Mitochondrial Glycerol-3-phosphate Dehydrogenase by the External NADH Dehydrogenase in Saccharomyces cerevisiae. Journal of Biological Chemistry. 2002 Aug;277(31):27991–5. doi: 10.1074/jbc.m204079200.; Lemire BD, Oyedotun KS. The Saccharomyces cerevisiae mitochondrial succinate:ubiquinone oxidoreductase. Biochimica et Biophysica Acta (BBA) - Bioenergetics. 2002 Jan;1553(1-2):102–16. doi: 10.1016/s0005-2728(01)00229-8.; Schägger H. Respiratory chain supercomplexes. IUBMB Life. 2001 Sep;52(3-5):119–28. doi: 10.1080/15216540152845911. PMID: 11798023.; Overkamp KM, Bakker BM, Ko¨tter P, van Tuijl A, de Vries S, van Dijken JP, Pronk JT. In Vivo Analysis of the Mechanisms for Oxidation of Cytosolic NADH by Saccharomyces cerevisiae Mitochondria. J Bacteriol. 2000 May 15;182(10):2823–30. doi: 10.1128/jb.182.10.2823-2830.2000.; Luttik MAH, Overkamp KM, Kötter P, de Vries S, van Dijken JP, Pronk JT. The Saccharomyces cerevisiae NDE1 and NDE2 Genes Encode Separate Mitochondrial NADH Dehydrogenases Catalyzing the Oxidation of Cytosolic NADH. Journal of Biological Chemistry. 1998 Sep;273(38):24529–34. doi: 10.1074/jbc.273.38.24529.; Geier BM, Schägger H, Ortwein C, Link TA, Hagen WR, Brandt U, Von Jagow G. Kinetic Properties and Ligand Binding of the Eleven-subunit Cytochrome-c Oxidase from Saccharomyces cerevisiae Isolated with a Novel Large-Scale Purification Method. European Journal of Biochemistry. 1995 Jan;227(1-2):296–302. doi: 10.1111/j.1432-1033.1995.tb20388.x.; DE VRIES S, VAN WITZENBURG R, GRIVELL LA, MARRES CAM. Primary structure and import pathway of the rotenone-insensitive NADH-ubiquinone oxidoreductase of mitochondria from Saccharomyces cerevisiae. European Journal of Biochemistry. 1992 Feb;203(3):587–92. doi: 10.1111/j.1432-1033.1992.tb16587.x.; Cooper CE, Nicholls P, Freedman JA. Cytochrome c oxidase: structure, function, and membrane topology of the polypeptide subunits. Biochem. Cell Biol. 1991 Sep 01;69(9):586–607. doi: 10.1139/o91-089.; MARRES CAM, de VRIES S, GRIVELL LA. Isolation and inactivation of the nuclear gene encoding the rotenone-insensitive internal NADH: ubiquinone oxidoreductase of mitochondria from Saccharomyces cerevisiae. European Journal of Biochemistry. 1991 Feb;195(3):857–62. doi: 10.1111/j.1432-1033.1991.tb15775.x.; Capaldi RA. Structure and assembly of cytochrome c oxidase. Archives of Biochemistry and Biophysics. 1990 Aug;280(2):252–62. doi: 10.1016/0003-9861(90)90327-u.; de VRIES S, GRIVELL LA. Purification and characterization of a rotenone-insensitive NADH: Q6 oxidoreductase from mitochondria of Saccharomyces cerevisiae. European Journal of Biochemistry. 1988 Sep;176(2):377–84. doi: 10.1111/j.1432-1033.1988.tb14292.x.; Daum G, Böhni PC, Schatz G. Import of proteins into mitochondria. Cytochrome b2 and cytochrome c peroxidase are located in the intermembrane space of yeast mitochondria. Journal of Biological Chemistry. 1982 Nov;257(21):13028–33. doi: 10.1016/s0021-9258(18)33617-2.; SINGER TP, MASSEY V, KEARNEY EB. Studies on succinic dehydrogenase. V. Isolation and properties of the dehydrogenase from baker's yeast. Arch Biochem Biophys. 1957 Jul;69():405–21. doi: 10.1016/0003-9861(57)90506-4. PMID: 13445213. |
| formate assimilation into 5,10-methylenetetrahydrofolate Accession ID: BioCyc:META_PWY-1722 |
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Marx CJ, Laukel M, Vorholt JA, Lidstrom ME. Purification of the Formate-Tetrahydrofolate Ligasefrom Methylobacterium extorquens AM1 and Demonstrationof Its Requirement for MethylotrophicGrowth. J Bacteriol. 2003 Dec 15;185(24):7169–75. doi: 10.1128/jb.185.24.7169-7175.2003. |
| L-phenylalanine biosynthesis III (cytosolic, plants) Accession ID: BioCyc:META_PWY-7432 |
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Yoo H, Widhalm JR, Qian Y, Maeda H, Cooper BR, Jannasch AS, Gonda I, Lewinsohn E, Rhodes D, Dudareva N. An alternative pathway contributes to phenylalanine biosynthesis in plants via a cytosolic tyrosine:phenylpyruvate aminotransferase. Nature Communications. 2013 Nov 25;4(1):2833. doi: 10.1038/ncomms3833.; Maeda H, Dudareva N. The shikimate pathway and aromatic amino Acid biosynthesis in plants. Annu Rev Plant Biol. 2012;63():73–105. doi: 10.1146/annurev-arplant-042811-105439. PMID: 22554242.; Mithöfer A, Boland W. Plant defense against herbivores: chemical aspects. Annu Rev Plant Biol. 2012;63():431–50. doi: 10.1146/annurev-arplant-042110-103854. PMID: 22404468.; Dixon RA, Pasinetti GM. Flavonoids and isoflavonoids: from plant biology to agriculture and neuroscience. Plant Physiol. 2010 Oct;154(2):453–7. PMID: 20921162; PMCID: PMC2948995.; Maeda H, Shasany AK, Schnepp J, Orlova I, Taguchi G, Cooper BR, Rhodes D, Pichersky E, Dudareva N. RNAi suppression of Arogenate Dehydratase1 reveals that phenylalanine is synthesized predominantly via the arogenate pathway in petunia petals. Plant Cell. 2010 Mar;22(3):832–49. PMID: 20215586; PMCID: PMC2861463.; Gonda I, Bar E, Portnoy V, Lev S, Burger J, Schaffer AA, Tadmor Y, Gepstein S, Giovannoni JJ, Katzir N, Lewinsohn E. Branched-chain and aromatic amino acid catabolism into aroma volatiles in Cucumis melo L. fruit. J Exp Bot. 2010 Feb;61(4):1111–23. PMID: 20065117; PMCID: PMC2826658.; Vogt T. Phenylpropanoid biosynthesis. Mol Plant. 2010 Jan;3(1):2–20. doi: 10.1093/mp/ssp106. PMID: 20035037.; Cho MH, Corea OR, Yang H, Bedgar DL, Laskar DD, Anterola AM, Moog-Anterola FA, Hood RL, Kohalmi SE, Bernards MA, Kang C, Davin LB, Lewis NG. Phenylalanine biosynthesis in Arabidopsis thaliana. Identification and characterization of arogenate dehydratases. J Biol Chem. 2007 Oct 19;282(42):30827–35. doi: 10.1074/jbc.m702662200. PMID: 17726025.; Prakash P, Pathak N, Hasnain SE. pheA (Rv3838c) of Mycobacterium tuberculosis Encodes an Allosterically Regulated Monofunctional Prephenate Dehydratase That Requires Both Catalytic and Regulatory Domains for Optimum Activity. Journal of Biological Chemistry. 2005 May;280(21):20666–71. doi: 10.1074/jbc.m502107200.; Dixon RA, Sumner LW. Legume natural products: understanding and manipulating complex pathways for human and animal health. Plant Physiol. 2003 Mar;131(3):878–85. PMID: 12644640; PMCID: PMC1540287.; Winkel-Shirley B. It takes a garden. How work on diverse plant species has contributed to an understanding of flavonoid metabolism. Plant Physiol. 2001 Dec;127(4):1399–404. PMID: 11743081; PMCID: PMC1540170. |
| diphthamide biosynthesis II (eukaryotes) Accession ID: BioCyc:META_PWY-7546 |
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Lin Z, Su X, Chen W, Ci B, Zhang S, Lin H. Dph7 catalyzes a previously unknown demethylation step in diphthamide biosynthesis. J Am Chem Soc. 2014 Apr 30;136(17):6179–82. PMID: 24739148; PMCID: PMC4015618.; Liu S, Milne GT, Kuremsky JG, Fink GR, Leppla SH. Identification of the Proteins Required for Biosynthesis of Diphthamide, the Target of Bacterial ADP-Ribosylating Toxins on Translation Elongation Factor 2. Molecular and Cellular Biology. 2004 Nov 01;24(21):9487–97. doi: 10.1128/mcb.24.21.9487-9497.2004. |
| pyrimidine deoxyribonucleotides de novo biosynthesis IV Accession ID: BioCyc:META_PWY-7198 |
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Li H, Xu H, Graham DE, White RH. The Methanococcus jannaschiidCTP Deaminase Is a Bifunctional Deaminase and Diphosphatase. Journal of Biological Chemistry. 2003 Mar;278(13):11100–6. doi: 10.1074/jbc.m212460200. |
| (4S)-carvone biosynthesis Accession ID: BioCyc:META_PWY-7443 |
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Ishida T. Biotransformation of terpenoids by mammals, microorganisms, and plant-cultured cells. Chem Biodivers. 2005 May;2(5):569–90. doi: 10.1002/cbdv.200590038. PMID: 17192005.; Duetz WA, Bouwmeester H, van Beilen JB, Witholt B. Biotransformation of limonene by bacteria, fungi, yeasts, and plants. Applied Microbiology and Biotechnology. 2003 Mar 15;61(4):269–77. doi: 10.1007/s00253-003-1221-y.; Wagner K, Elmadfa I. Biological Relevance of Terpenoids. Ann Nutr Metab. 2003;47(3-4):95–106. doi: 10.1159/000070030.; MARUYAMA T, ITO M, KIUCHI F, HONDA G. Molecular Cloning, Functional Expression and Characterization of d-Limonene Synthase from Schizonepeta tenuifolia. Biological & Pharmaceutical Bulletin. 2001;24(4):373–7. doi: 10.1248/bpb.24.373.; van der Werf MJ, van der Ven C, Barbirato F, Eppink MH, de Bont JA, van Berkel WJ. Stereoselective carveol dehydrogenase from Rhodococcus erythropolis DCL14. A novel nicotinoprotein belonging to the short chain dehydrogenase/reductase superfamily. J Biol Chem. 1999 Sep 10;274(37):26296–304. doi: 10.1074/jbc.274.37.26296. PMID: 10473585.; Bouwmeester, Gershenzon, Konings, Croteau. Biosynthesis of the monoterpenes limonene and carvone in the fruit of caraway. I. Demonstration Of enzyme activities and their changes with development . Plant Physiol. 1998 Jul;117(3):901–12. PMID: 9662532; PMCID: PMC34944.; Gershenzon J, Maffei M, Croteau R. Biochemical and Histochemical Localization of Monoterpene Biosynthesis in the Glandular Trichomes of Spearmint (Mentha spicata). Plant Physiol. 1989 Apr 01;89(4):1351–7. doi: 10.1104/pp.89.4.1351. |
| linalool biosynthesis I Accession ID: BioCyc:META_PWY-7182 |
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Jia JW, Crock J, Lu S, Croteau R, Chen XY. (3R)-Linalool synthase from Artemisia annua L.: cDNA isolation, characterization, and wound induction. Arch Biochem Biophys. 1999 Dec 01;372(1):143–9. doi: 10.1006/abbi.1999.1466. PMID: 10562427. |
| cinnamate esters biosynthesis Accession ID: BioCyc:META_PWY-5968 |
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Landmann C, Fink B, Schwab W. FaGT2: a multifunctional enzyme from strawberry (Fragaria x ananassa) fruits involved in the metabolism of natural and xenobiotic compounds. Planta. 2007 Jul;226(2):417–28. doi: 10.1007/s00425-007-0492-4. PMID: 17323078. |