Pathways Knowlegdes

Biological pathway database


Pathway DOIs Note
carbazole degradation

Accession ID: BioCyc:META_PWY-6550
  • 10.1021/bi049489p
  • 10.1371/journal.pone.0010018
Gai Z, Wang X, Liu X, Tai C, Tang H, He X, Wu G, Deng Z, Xu P. The Genes Coding for the Conversion of Carbazole to Catechol Are Flanked by IS6100 Elements in Sphingomonas sp. Strain XLDN2-5. PLoS ONE. 2010 Apr 02;5(4):e10018. doi: 10.1371/journal.pone.0010018.; Johnson WH, Wang SC, Stanley TM, Czerwinski RM, Almrud JJ, Poelarends GJ, Murzin AG, Whitman CP. 4-Oxalocrotonate tautomerase, its homologue YwhB, and active vinylpyruvate hydratase: synthesis and evaluation of 2-fluoro substrate analogues. Biochemistry. 2004 Aug 17;43(32):10490–501. doi: 10.1021/bi049489p. PMID: 15301547.
superpathway of nicotinate degradation

Accession ID: BioCyc:META_PWY-5062
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4-hydroxybenzoate biosynthesis II (bacteria)

Accession ID: BioCyc:META_PWY-5755
  • 10.1002/prot.1095
Gallagher DT, Mayhew M, Holden MJ, Howard A, Kim KJ, Vilker VL. The crystal structure of chorismate lyase shows a new fold and a tightly retained product. Proteins. 2001 Aug 15;44(3):304–11. doi: 10.1002/prot.1095. PMID: 11455603.
serotonin degradation

Accession ID: BioCyc:META_PWY-6313
  • 10.1096/fj.04-2079rev
  • 10.1111/j.1471-4159.2007.04739.x
Squires LN, Talbot KN, Rubakhin SS, Sweedler JV. Serotonin catabolism in the central and enteric nervous systems of rats upon induction of serotonin syndrome. Journal of Neurochemistry. 2007 Jun 03;103(1):174–80. doi: 10.1111/j.1471-4159.2007.04739.x.; Slominski A, Wortsman J, Tobin DJ. The cutaneous serotoninergic/melatoninergic system: securing a place under the sun. FASEB J. 2005 Feb;19(2):176–94. doi: 10.1096/fj.04-2079rev. PMID: 15677341.
noradrenaline and adrenaline degradation

Accession ID: BioCyc:META_PWY-6342
  • 10.1007/s10571-006-9041-0
  • 10.1016/s0021-9258(18)64137-7
  • 10.1124/jpet.103.049270
  • 10.1124/pr.56.3.1
Goldstein DS, Eisenhofer G, Kopin IJ. Clinical Catecholamine Neurochemistry: A Legacy of Julius Axelrod. Cellular and Molecular Neurobiology. 2006 Jul 27;26(4-6):693–700. doi: 10.1007/s10571-006-9041-0.; Eisenhofer G, Kopin IJ, Goldstein DS. Catecholamine metabolism: a contemporary view with implications for physiology and medicine. Pharmacol Rev. 2004 Sep;56(3):331–49. doi: 10.1124/pr.56.3.1. PMID: 15317907.; Goldstein DS, Eisenhofer G, Kopin IJ. Sources and Significance of Plasma Levels of Catechols and Their Metabolites in Humans. The Journal of Pharmacology and Experimental Therapeutics. 2003 Jun;305(3):800–11. doi: 10.1124/jpet.103.049270.; Kopin IJ, Axelrod J, Gordon E. The Metabolic Fate of H3-Epinephrine and C14-Metanephrine in the Rat. Journal of Biological Chemistry. 1961 Jul;236(7):2109–13. doi: 10.1016/s0021-9258(18)64137-7.
L-glutamate degradation V (via hydroxyglutarate)

Accession ID: BioCyc:META_P162-PWY
  • 10.1016/s0021-9258(18)65732-1
  • 10.1016/s0021-9258(18)71290-8
  • 10.1016/s0021-9258(18)71291-x
  • 10.1096/fasebj.9.9.7601336
  • 10.1111/j.1432-1033.1987.tb13631.x
  • 10.1128/jb.117.3.1248-1260.1974
Thorpe C, Kim JP. Structure and mechanism of action of the Acyl-CoA dehydrogenases 1. The FASEB Journal. 1995 Jun;9(9):718–25. doi: 10.1096/fasebj.9.9.7601336.; Schweiger G, Dutscho R, Buckel W. Purification of 2-hydroxyglutaryl-CoA dehydratase from Acidaminococcus fermentans. An iron-sulfur protein. Eur J Biochem. 1987 Dec 01;169(2):441–8. doi: 10.1111/j.1432-1033.1987.tb13631.x. PMID: 3691501.; Buckel W, Barker HA. Two Pathways of Glutamate Fermentation by Anaerobic Bacteria. J Bacteriol. 1974 Mar;117(3):1248–60. doi: 10.1128/jb.117.3.1248-1260.1974.; Hauge JG, Crane FL, Beinert H. ON THE MECHANISM OF DEHYDROGENATION OF FATTY ACYL DERIVATIVES OF COENZYME A. Journal of Biological Chemistry. 1956 Apr;219(2):727–33. doi: 10.1016/s0021-9258(18)65732-1.; Green DE, Mii S, Mahler HR, Bock RM. STUDIES ON THE FATTY ACID OXIDIZING SYSTEM OF ANIMAL TISSUES. Journal of Biological Chemistry. 1954 Jan;206(1):1–12. doi: 10.1016/s0021-9258(18)71290-8.; MAHLER HR. Studies on the fatty acid oxidizing system of animal tissues. IV. The prosthetic group of butyryl coenzyme A dehydrogenase. J Biol Chem. 1954 Jan;206(1):13–26. PMID: 13130522.
acetate and ATP formation from acetyl-CoA II

Accession ID: BioCyc:META_PWY-5535
  • 10.1016/s0021-9258(17)32778-3
  • 10.1111/j.1432-1033.1997.00561.x
Glasemacher J, Bock A, Schmid R, Schönheit P. Purification and Properties of Acetyl-CoA Synthetase (ADP-forming), an Archaeal Enzyme of Acetate Formation and ATP Synthesis, from the Hyperthermophile Pyrococcus furiosus. European Journal of Biochemistry. 1997 Mar;244(2):561–7. doi: 10.1111/j.1432-1033.1997.00561.x.; Reeves RE, Warren LG, Susskind B, Lo HS. An energy-conserving pyruvate-to-acetate pathway in Entamoeba histolytica. Pyruvate synthase and a new acetate thiokinase. Journal of Biological Chemistry. 1977 Jan;252(2):726–31. doi: 10.1016/s0021-9258(17)32778-3.
L-lysine fermentation to acetate and butanoate

Accession ID: BioCyc:META_P163-PWY
  • 10.1016/s0021-9258(18)65732-1
  • 10.1016/s0021-9258(18)71290-8
  • 10.1016/s0021-9258(18)71291-x
  • 10.1016/s0021-9258(18)94472-8
  • 10.1016/s0021-9258(18)96751-7
  • 10.1021/bi00730a006
  • 10.1021/bi020255k
  • 10.1096/fasebj.9.9.7601336
  • 10.1099/00207713-50-3-1259
  • 10.1128/jb.152.1.201-207.1982
  • 10.1128/jb.182.2.469-476.2000
Tang KH, Harms A, Frey PA. Identification of a novel pyridoxal 5'-phosphate binding site in adenosylcobalamin-dependent lysine 5,6-aminomutase from Porphyromonas gingivalis. Biochemistry. 2002 Jul 09;41(27):8767–76. doi: 10.1021/bi020255k. PMID: 12093296.; Mechichi T, Fardeau ML, Labat M, Garcia JL, Verhé F, Patel BK. Clostridium peptidivorans sp. nov., a peptide-fermenting bacterium from an olive mill wastewater treatment digester. Int J Syst Evol Microbiol. 2000 May;50 Pt 3():1259–64. doi: 10.1099/00207713-50-3-1259. PMID: 10843071.; Ruzicka FJ, Lieder KW, Frey PA. Lysine 2,3-Aminomutase from Clostridium subterminale SB4: Mass Spectral Characterization of Cyanogen Bromide-Treated Peptides and Cloning, Sequencing, and Expression of the Gene kamA in Escherichia coli. J Bacteriol. 2000 Jan 15;182(2):469–76. doi: 10.1128/jb.182.2.469-476.2000.; Thorpe C, Kim JP. Structure and mechanism of action of the Acyl-CoA dehydrogenases 1. The FASEB Journal. 1995 Jun;9(9):718–25. doi: 10.1096/fasebj.9.9.7601336.; Barker HA, Kahn JM, Hedrick L. Pathway of lysine degradation in Fusobacterium nucleatum. J Bacteriol. 1982 Oct;152(1):201–7. doi: 10.1128/jb.152.1.201-207.1982.; Baker JJ, van der Drift C, Stadtman TC. Purification and properties of -lysine mutase, a pyridoxal phosphate and B 12 coenzyme dependent enzyme. Biochemistry. 1973 Mar 13;12(6):1054–63. doi: 10.1021/bi00730a006. PMID: 4540127.; Chirpich TP, Zappia V, Costilow RN, Barker HA. Lysine 2,3-aminomutase. Purification and properties of a pyridoxal phosphate and S-adenosylmethionine-activated enzyme. J Biol Chem. 1970 Apr 10;245(7):1778–89. PMID: 5438361.; Rimerman EA, Barker HA. Formation and Identification of 3-Keto-5-aminohexanoic Acid, a Probable Intermediate in Lysine Fermentation. Journal of Biological Chemistry. 1968 Dec;243(23):6151–60. doi: 10.1016/s0021-9258(18)94472-8.; Costilow RN, Rochovansky OM, Barker HA. Isolation and Identification of ß-Lysine as an Intermediate in Lysine Fermentation. Journal of Biological Chemistry. 1966 Apr;241(7):1573–80. doi: 10.1016/s0021-9258(18)96751-7.; Hauge JG, Crane FL, Beinert H. ON THE MECHANISM OF DEHYDROGENATION OF FATTY ACYL DERIVATIVES OF COENZYME A. Journal of Biological Chemistry. 1956 Apr;219(2):727–33. doi: 10.1016/s0021-9258(18)65732-1.; Green DE, Mii S, Mahler HR, Bock RM. STUDIES ON THE FATTY ACID OXIDIZING SYSTEM OF ANIMAL TISSUES. Journal of Biological Chemistry. 1954 Jan;206(1):1–12. doi: 10.1016/s0021-9258(18)71290-8.; MAHLER HR. Studies on the fatty acid oxidizing system of animal tissues. IV. The prosthetic group of butyryl coenzyme A dehydrogenase. J Biol Chem. 1954 Jan;206(1):13–26. PMID: 13130522.
S-methyl-5-thio-α-D-ribose 1-phosphate degradation II

Accession ID: BioCyc:META_PWY-7174
  • 10.1021/bi801685f
  • 10.1038/nchembio.1087
Erb TJ, Evans BS, Cho K, Warlick BP, Sriram J, Wood BM, Imker HJ, Sweedler JV, Tabita FR, Gerlt JA. A RubisCO-like protein links SAM metabolism with isoprenoid biosynthesis. Nature Chemical Biology. 2012 Oct 07;8(11):926–32. doi: 10.1038/nchembio.1087.; Imker HJ, Singh J, Warlick BP, Tabita FR, Gerlt JA. Mechanistic Diversity in the RuBisCO Superfamily: A Novel Isomerization Reaction Catalyzed by the RuBisCO-like Protein from Rhodospirillum rubrum. Biochemistry. 2008 Oct 01;47(43):11171–3. doi: 10.1021/bi801685f.
D-glucarate degradation I

Accession ID: BioCyc:META_GLUCARDEG-PWY
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4-amino-3-hydroxybenzoate degradation

Accession ID: BioCyc:META_PWY-7006
  • 10.1111/j.1574-6968.2009.01699.x
  • 10.1128/jb.00430-12
  • 10.1128/jb.00840-09
  • 10.1271/bbb.60264
Marín M, Plumeier I, Pieper DH. Degradation of 2,3-dihydroxybenzoate by a novel meta-cleavage pathway. J Bacteriol. 2012 Aug;194(15):3851–60. PMID: 22609919; PMCID: PMC3416551.; Kasai D, Fujinami T, Abe T, Mase K, Katayama Y, Fukuda M, Masai E. Uncovering the protocatechuate 2,3-cleavage pathway genes. J Bacteriol. 2009 Nov;191(21):6758–68. PMID: 19717587; PMCID: PMC2795304.; Takenaka S, Sato T, Koshiya J, Murakami S, Aoki K. Gene cloning and characterization of a deaminase from the 4-amino-3-hydroxybenzoate-assimilating Bordetella sp. strain 10d. FEMS Microbiol Lett. 2009 Sep;298(1):93–8. doi: 10.1111/j.1574-6968.2009.01699.x. PMID: 19594622.; ORII C, TAKENAKA S, MURAKAMI S, AOKI K. Metabolism of 4-Amino-3-hydroxybenzoic Acid byBordetellasp. Strain 10d: A Different ModifiedMeta-Cleavage Pathway for 2-Aminophenols. Bioscience, Biotechnology, and Biochemistry. 2006 Nov 23;70(11):2653–61. doi: 10.1271/bbb.60264.
noscapine biosynthesis

Accession ID: BioCyc:META_PWY-7138
  • 10.1038/nchembio.1717
  • 10.1111/tpj.13947
  • 10.1126/science.1220757
Park MR, Chen X, Lang DE, Ng KKS, Facchini PJ. Heterodimeric O-methyltransferases involved in the biosynthesis of noscapine in opium poppy. The Plant Journal. 2018 Jun 08;95(2):252–67. doi: 10.1111/tpj.13947.; Dang TT, Chen X, Facchini PJ. Acetylation serves as a protective group in noscapine biosynthesis in opium poppy. Nat Chem Biol. 2015 Feb;11(2):104–6. doi: 10.1038/nchembio.1717. PMID: 25485687.; Winzer T, Gazda V, He Z, Kaminski F, Kern M, Larson TR, Li Y, Meade F, Teodor R, Vaistij FE, Walker C, Bowser TA, Graham IA. A Papaver somniferum 10-gene cluster for synthesis of the anticancer alkaloid noscapine. Science. 2012 Jun 29;336(6089):1704–8. doi: 10.1126/science.1220757. PMID: 22653730.
methylglyoxal degradation VII

Accession ID: BioCyc:META_PWY-5456
  • 10.1016/0304-4165(69)90052-x
Higgins IJ, Turner JM. Enzymes of methylglyoxal metabolism in a Pseudomand which rapidly metabolizes aminoacetone. Biochimica et Biophysica Acta (BBA) - General Subjects. 1969 Jul;184(2):464–7. doi: 10.1016/0304-4165(69)90052-x.
anaerobic energy metabolism (invertebrates, mitochondrial)

Accession ID: BioCyc:META_PWY-7384
  • 10.1007/bfb0030909
  • 10.1016/0003-9861(80)90442-7
  • 10.1016/0166-6851(89)90036-4
  • 10.1016/s0968-0004(02)02193-x
  • 10.1074/jbc.270.52.31065
  • 10.1128/mmbr.05024-11
Müller M, Mentel M, van Hellemond JJ, Henze K, Woehle C, Gould SB, Yu R, van der Giezen M, Tielens AGM, Martin WF. Biochemistry and Evolution of Anaerobic Energy Metabolism in Eukaryotes. Microbiol Mol Biol Rev. 2012 Jun;76(2):444–95. doi: 10.1128/mmbr.05024-11.; Tielens AG, Rotte C, van Hellemond JJ, Martin W. Mitochondria as we don't know them. Trends Biochem Sci. 2002 Nov;27(11):564–72. doi: 10.1016/s0968-0004(02)02193-x. PMID: 12417132.; Van Hellemond JJ, Klockiewicz M, Gaasenbeek CPH, Roos MH, Tielens AGM. Rhodoquinone and Complex II of the Electron Transport Chain in Anaerobically Functioning Eukaryotes. Journal of Biological Chemistry. 1995 Dec;270(52):31065–70. doi: 10.1074/jbc.270.52.31065.; Grieshaber MK, Hardewig I, Kreutzer U, Pörtner HO. Physiological and metabolic responses to hypoxia in invertebrates. Rev Physiol Biochem Pharmacol. 1994;125():43–147. doi: 10.1007/bfb0030909. PMID: 7984874.; Campbell T, Rubin N, Komuniecki R. Succinate-dependent energy generation in Ascaris suum mitochondria. Molecular and Biochemical Parasitology. 1989 Feb;33(1):1–12. doi: 10.1016/0166-6851(89)90036-4.; Saz HJ, Pietrzak SM. Phosphorylation associated with succinate decarboxylation to propionate in Ascaris mitochondria. Archives of Biochemistry and Biophysics. 1980 Jul;202(2):388–95. doi: 10.1016/0003-9861(80)90442-7.
superpathway of aromatic compound degradation via 2-hydroxypentadienoate

Accession ID: BioCyc:META_PWY-6954
  • 10.1016/0378-1119(91)90470-v
  • 10.1093/genetics/66.2.245
  • 10.1111/j.1574-6968.2009.01699.x
  • 10.1128/jb.00430-12
  • 10.1128/jb.00840-09
  • 10.1128/jb.128.1.182-191.1976
  • 10.1128/jb.173.15.4587-4594.1991
  • 10.1146/annurev.micro.50.1.553
Marín M, Plumeier I, Pieper DH. Degradation of 2,3-dihydroxybenzoate by a novel meta-cleavage pathway. J Bacteriol. 2012 Aug;194(15):3851–60. PMID: 22609919; PMCID: PMC3416551.; Kasai D, Fujinami T, Abe T, Mase K, Katayama Y, Fukuda M, Masai E. Uncovering the protocatechuate 2,3-cleavage pathway genes. J Bacteriol. 2009 Nov;191(21):6758–68. PMID: 19717587; PMCID: PMC2795304.; Takenaka S, Sato T, Koshiya J, Murakami S, Aoki K. Gene cloning and characterization of a deaminase from the 4-amino-3-hydroxybenzoate-assimilating Bordetella sp. strain 10d. FEMS Microbiol Lett. 2009 Sep;298(1):93–8. doi: 10.1111/j.1574-6968.2009.01699.x. PMID: 19594622.; Harwood CS, Parales RE. The beta-ketoadipate pathway and the biology of self-identity. Annu Rev Microbiol. 1996;50():553–90. doi: 10.1146/annurev.micro.50.1.553. PMID: 8905091.; Kukor JJ, Olsen RH. Genetic organization and regulation of a meta cleavage pathway for catechols produced from catabolism of toluene, benzene, phenol, and cresols by Pseudomonas pickettii PKO1. J Bacteriol. 1991 Aug;173(15):4587–94. doi: 10.1128/jb.173.15.4587-4594.1991.; Menn FM, Zylstra GJ, Gibson DT. Location and sequence of the todF gene encoding 2-hydroxy-6-oxohepta-2,4-dienoate hydrolase in Pseudomonas putida F1. Gene. 1991 Jul 31;104(1):91–4. doi: 10.1016/0378-1119(91)90470-v. PMID: 1916282.; Kishore G, Sugumaran M, Vaidyanathan CS. Metabolism of DL-(+/-)-phenylalanine by Aspergillus niger. J Bacteriol. 1976 Oct;128(1):182–91. doi: 10.1128/jb.128.1.182-191.1976.; Wheelis ML, Stanier RY. The genetic control of dissimilatory pathways in Pseudomonas putida. Genetics. 1970 Oct;66(2):245–66. PMID: 5525301; PMCID: PMC1212492.
ephedrine biosynthesis

Accession ID: BioCyc:META_PWY-5883
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ferrichrome biosynthesis

Accession ID: BioCyc:META_PWY-7577
  • 10.1007/bf00436063
  • 10.1007/s00253-003-1335-2
  • 10.1016/0003-9861(72)90117-8
  • 10.1016/0005-2744(81)90317-x
  • 10.1016/0167-4838(91)90228-r
  • 10.1021/bi00784a033
  • 10.1073/pnas.90.3.903
  • 10.1128/jb.171.5.2811-2818.1989
  • 10.1128/jb.183.13.4040-4051.2001
  • 10.1128/jb.188.8.3149-3152.2006
  • 10.1128/mmbr.00012-07
  • 10.1146/annurev-phyto-080508-081923
  • 10.1146/annurev.bi.50.070181.003435
  • 10.1146/annurev.phyto.45.062806.094338
Brefort T, Doehlemann G, Mendoza-Mendoza A, Reissmann S, Djamei A, Kahmann R. Ustilago maydis as a Pathogen. Annu. Rev. Phytopathol. 2009 Sep 01;47(1):423–45. doi: 10.1146/annurev-phyto-080508-081923.; Haas H, Eisendle M, Turgeon BG. Siderophores in fungal physiology and virulence. Annu Rev Phytopathol. 2008;46():149–87. doi: 10.1146/annurev.phyto.45.062806.094338. PMID: 18680426.; Miethke M, Marahiel MA. Siderophore-based iron acquisition and pathogen control. Microbiol Mol Biol Rev. 2007 Sep;71(3):413–51. PMID: 17804665; PMCID: PMC2168645.; Lamont IL, Martin LW, Sims T, Scott A, Wallace M. Characterization of a Gene Encoding an Acetylase Required for Pyoverdine Synthesis in Pseudomonas aeruginosa. J Bacteriol. 2006 Apr 15;188(8):3149–52. doi: 10.1128/jb.188.8.3149-3152.2006.; Haas H. Molecular genetics of fungal siderophore biosynthesis and uptake: the role of siderophores in iron uptake and storage. Applied Microbiology and Biotechnology. 2003 Sep 01;62(4):316–30. doi: 10.1007/s00253-003-1335-2.; Yuan WM, Gentil GD, Budde AD, Leong SA. Characterization of theUstilago maydis sid2Gene, Encoding a Multidomain Peptide Synthetase in the Ferrichrome Biosynthetic Gene Cluster. J Bacteriol. 2001 Jul;183(13):4040–51. doi: 10.1128/jb.183.13.4040-4051.2001.; Crichton RR, Ward RJ. Iron homeostasis. Met Ions Biol Syst. 1998;35():633–65. PMID: 9444771.; Mei B, Budde AD, Leong SA. sid1, a gene initiating siderophore biosynthesis in Ustilago maydis: molecular characterization, regulation by iron, and role in phytopathogenicity. Proc Natl Acad Sci U S A. 1993 Feb 01;90(3):903–7. PMID: 8430103; PMCID: PMC45778.; Siegmund K, Plattner HJ, Diekmann H. Purification of ferrichrome synthetase from Aspergillus quadricinctus and characterisation as a phosphopantetheine containing multienzyme complex. Biochimica et Biophysica Acta (BBA) - Protein Structure and Molecular Enzymology. 1991 Jan;1076(1):123–9. doi: 10.1016/0167-4838(91)90228-r.; Budde AD, Leong SA. Characterization of siderophores from Ustilago maydis. Mycopathologia. 1989 Nov;108(2):125–33. doi: 10.1007/bf00436063. PMID: 2531844.; Wang J, Budde AD, Leong SA. Analysis of ferrichrome biosynthesis in the phytopathogenic fungus Ustilago maydis: cloning of an ornithine-N5-oxygenase gene. J Bacteriol. 1989 May;171(5):2811–8. doi: 10.1128/jb.171.5.2811-2818.1989.; Neilands JB. Microbial iron compounds. Annu Rev Biochem. 1981;50():715–31. doi: 10.1146/annurev.bi.50.070181.003435. PMID: 6455965.; Hummel W, Diekmann H. Preliminary characterization of ferrichrome synthetase from aspergillus quadricinctus. Biochimica et Biophysica Acta (BBA) - Enzymology. 1981 Feb;657(2):313–20. doi: 10.1016/0005-2744(81)90317-x.; Ong DE, Emery TF. Ferrichrome biosynthesis: Enzyme catalyzed formation of the hydroxamic acid group. Archives of Biochemistry and Biophysics. 1972 Jan;148(1):77–83. doi: 10.1016/0003-9861(72)90117-8.; Emery T. Role of ferrichrome as a ferric ionophore in Ustilago sphaerogena. Biochemistry. 1971 Apr 13;10(8):1483–8. doi: 10.1021/bi00784a033. PMID: 5580666.
dhurrin degradation

Accession ID: BioCyc:META_PWY-5976
  • 10.1104/pp.116.4.1469
Cicek M, Esen A. Structure and expression of a dhurrinase (beta-glucosidase) from sorghum. Plant Physiol. 1998 Apr;116(4):1469–78. PMID: 9536065; PMCID: PMC35055.
linustatin bioactivation

Accession ID: BioCyc:META_PWY-7091
  • 10.1002/(sici)1097-0134(199703)27:3<438::aid-prot11>3.0.co;2-m
  • 10.1016/0003-9861(85)90513-2
  • 10.1016/j.phytochem.2003.10.016
  • 10.1016/j.phytochem.2008.08.020
  • 10.1016/j.phytochem.2009.03.020
  • 10.1016/j.phytochem.2011.02.023
  • 10.1016/s0031-9422(97)00425-1
  • 10.1016/s0041-0101(99)00128-2
  • 10.1074/jbc.271.10.5884
  • 10.1104/pp.83.3.557
  • 10.1104/pp.86.3.711
Zagrobelny M, Møller BL. Cyanogenic glucosides in the biological warfare between plants and insects: the Burnet moth-Birdsfoot trefoil model system. Phytochemistry. 2011 Sep;72(13):1585–92. doi: 10.1016/j.phytochem.2011.02.023. PMID: 21429539.; Kongsawadworakul P, Viboonjun U, Romruensukharom P, Chantuma P, Ruderman S, Chrestin H. The leaf, inner bark and latex cyanide potential of Hevea brasiliensis: evidence for involvement of cyanogenic glucosides in rubber yield. Phytochemistry. 2009 Apr;70(6):730–9. doi: 10.1016/j.phytochem.2009.03.020. PMID: 19409582.; Piotrowski M. Primary or secondary? Versatile nitrilases in plant metabolism. Phytochemistry. 2008 Nov;69(15):2655–67. doi: 10.1016/j.phytochem.2008.08.020. PMID: 18842274.; Zagrobelny M, Bak S, Rasmussen AV, Jørgensen B, Naumann CM, Lindberg Møller B. Cyanogenic glucosides and plant-insect interactions. Phytochemistry. 2004 Feb;65(3):293–306. doi: 10.1016/j.phytochem.2003.10.016. PMID: 14751300.; Vetter J. Plant cyanogenic glycosides. Toxicon. 2000 Jan;38(1):11–36. doi: 10.1016/s0041-0101(99)00128-2. PMID: 10669009.; Jones DA. Why are so many food plants cyanogenic? Phytochemistry. 1998 Jan;47(2):155–62. doi: 10.1016/s0031-9422(97)00425-1. PMID: 9431670.; Hasslacher M, Kratky C, Griengl H, Schwab H, Kohlwein SD. Hydroxynitrile lyase from Hevea brasiliensis: Molecular characterization and mechanism of enzyme catalysis. Proteins. 1997 Mar;27(3):438–49. doi: 10.1002/(sici)1097-0134(199703)27:3<438::aid-prot11>3.3.co;2-r.; Hasslacher M, Schall M, Hayn M, Griengl H, Kohlwein SD, Schwab H. Molecular cloning of the full-length cDNA of (S)-hydroxynitrile lyase from Hevea brasiliensis. Functional expression in Escherichia coli and Saccharomyces cerevisiae and identification of an active site residue. J Biol Chem. 1996 Mar 08;271(10):5884–91. doi: 10.1074/jbc.271.10.5884. PMID: 8621461.; Selmar D, Lieberei R, Biehl B. Mobilization and utilization of cyanogenic glycosides: the linustatin pathway. Plant Physiol. 1988 Mar;86(3):711–6. PMID: 16665975; PMCID: PMC1054557.; Selmar D, Lieberei R, Biehl B, Voigt J. Hevea Linamarase-A Nonspecific beta-Glycosidase. Plant Physiol. 1987 Mar;83(3):557–63. PMID: 16665288; PMCID: PMC1056404.; Fan TW-, Conn EE. Isolation and characterization of two cyanogenic ß-glucosidases from flax seeds. Archives of Biochemistry and Biophysics. 1985 Dec;243(2):361–73. doi: 10.1016/0003-9861(85)90513-2.
lotaustralin degradation

Accession ID: BioCyc:META_PWY-6002
  • 10.1104/pp.107.109512
Morant AV, Bjarnholt N, Kragh ME, Kjaergaard CH, Jørgensen K, Paquette SM, Piotrowski M, Imberty A, Olsen CE, Møller BL, Bak S. The beta-glucosidases responsible for bioactivation of hydroxynitrile glucosides in Lotus japonicus. Plant Physiol. 2008 Jul;147(3):1072–91. PMID: 18467457; PMCID: PMC2442532.