Pathways Knowlegdes

Biological pathway database

Pathway DOIs Note
Biotin biosynthesis II

Accession ID: Plant Reactome:R-BNA-1119610		 -
Ethene biosynthesis from methionine

Accession ID: Plant Reactome:R-BNA-1119334
  • 10.1111/nph.13209
 Voesenek LACJ, Bailey-Serres J. Flood adaptive traits and processes: an overview. New Phytol. 2015 Apr;206(1):57–73. doi: 10.1111/nph.13209. PMID: 25580769.
Fatty acid and lipid metabolism

Accession ID: Plant Reactome:R-BNA-3906998		 -
Choline biosynthesis I

Accession ID: Plant Reactome:R-BNA-1119556
  • 10.1073/pnas.171228998
  • 10.1074/jbc.m704939200
  • 10.1104/pp.103.4.1269
  • 10.1105/tpc.15.00207
 Lin YC, Liu YC, Nakamura Y. The Choline/Ethanolamine Kinase Family in Arabidopsis: Essential Role of CEK4 in Phospholipid Biosynthesis and Embryo Development. Plant Cell. 2015 May;27(5):1497–511. PMID: 25966764; PMCID: PMC4456650.; Waditee R, Bhuiyan NH, Hirata E, Hibino T, Tanaka Y, Shikata M, Takabe T. Metabolic Engineering for Betaine Accumulation in Microbes and Plants. Journal of Biological Chemistry. 2007 Nov;282(47):34185–93. doi: 10.1074/jbc.m704939200.; McNeil SD, Nuccio ML, Ziemak MJ, Hanson AD. Enhanced synthesis of choline and glycine betaine in transgenic tobacco plants that overexpress phosphoethanolamine N -methyltransferase. Proc. Natl. Acad. Sci. U.S.A. 2001 Jul 31;98(17):10001–5. doi: 10.1073/pnas.171228998.; Summers PS, Weretilnyk EA. Choline Synthesis in Spinach in Relation to Salt Stress. Plant Physiol. 1993 Dec;103(4):1269–76. PMID: 12232019; PMCID: PMC159115.
Inorganic nutrients metabolism

Accession ID: Plant Reactome:R-BNA-5368291		 -
Yang cycle

Accession ID: Plant Reactome:R-BRA-1119624		 -
Methionine biosynthesis II

Accession ID: Plant Reactome:R-BRA-1119400		 -
Spermine biosynthesis

Accession ID: Plant Reactome:R-BRA-1119317		 -
Ethylene biosynthesis and signaling

Accession ID: Plant Reactome:R-BRA-5225808		 -
Sterol biosynthesis

Accession ID: Plant Reactome:R-BRA-1119370		 -
Yang cycle

Accession ID: Plant Reactome:R-OPU-1119624		 -
Methionine biosynthesis II

Accession ID: Plant Reactome:R-OPU-1119400		 -
Spermine biosynthesis

Accession ID: Plant Reactome:R-OPU-1119317		 -
Ethylene biosynthesis and signaling

Accession ID: Plant Reactome:R-OPU-5225808		 -
Sterol biosynthesis

Accession ID: Plant Reactome:R-OPU-1119370		 -
Amino acid biosynthesis

Accession ID: Plant Reactome:R-DCA-5655122		 -
Spermine biosynthesis

Accession ID: Plant Reactome:R-DCA-1119317		 -
Ethylene biosynthesis and signaling

Accession ID: Plant Reactome:R-DCA-5225808		 -
Sterol biosynthesis

Accession ID: Plant Reactome:R-DCA-1119370		 -
SAM cycle

Accession ID: Plant Reactome:R-CCA-1119501		 -