Pathways Knowlegdes

Biological pathway database

Pathway DOIs Note
Inorganic nutrients metabolism

Accession ID: Plant Reactome:R-OGU-5368291		 -
Amino acid biosynthesis

Accession ID: Plant Reactome:R-OMI-5655122		 -
Mugineic acid biosynthesis

Accession ID: Plant Reactome:R-OMI-9025754
  • 10.1007/s11103-007-9262-8
  • 10.1046/j.1365-313x.2003.01878.x
  • 10.1074/jbc.m604133200
  • 10.1104/pp.107.107912
  • 10.1104/pp.121.3.947
  • 10.2183/pjab.86.900
 Kobayashi T, Nakanishi H, Nishizawa NK. Recent insights into iron homeostasis and their application in graminaceous crops. Proc Jpn Acad Ser B Phys Biol Sci. 2010;86(9):900–13. PMID: 21084773; PMCID: PMC3035920.; Inoue H, Takahashi M, Kobayashi T, Suzuki M, Nakanishi H, Mori S, Nishizawa NK. Identification and localisation of the rice nicotianamine aminotransferase gene OsNAAT1 expression suggests the site of phytosiderophore synthesis in rice. Plant Mol Biol. 2008 Jan;66(1-2):193–203. doi: 10.1007/s11103-007-9262-8. PMID: 18034312.; Cheng L, Wang F, Shou H, Huang F, Zheng L, He F, Li J, Zhao FJ, Ueno D, Ma JF, Wu P. Mutation in nicotianamine aminotransferase stimulated the Fe(II) acquisition system and led to iron accumulation in rice. Plant Physiol. 2007 Dec;145(4):1647–57. PMID: 17951455; PMCID: PMC2151683.; Bashir K, Inoue H, Nagasaka S, Takahashi M, Nakanishi H, Mori S, Nishizawa NK. Cloning and Characterization of Deoxymugineic Acid Synthase Genes from Graminaceous Plants. Journal of Biological Chemistry. 2006 Oct;281(43):32395–402. doi: 10.1074/jbc.m604133200.; Inoue H, Higuchi K, Takahashi M, Nakanishi H, Mori S, Nishizawa NK. Three rice nicotianamine synthase genes, OsNAS1, OsNAS2, and OsNAS3 are expressed in cells involved in long-distance transport of iron and differentially regulated by iron. The Plant Journal. 2003 Oct 13;36(3):366–81. doi: 10.1046/j.1365-313x.2003.01878.x.; Takahashi M, Yamaguchi H, Nakanishi H, Shioiri T, Nishizawa NK, Mori S. Cloning two genes for nicotianamine aminotransferase, a critical enzyme in iron acquisition (Strategy II) in graminaceous plants. Plant Physiol. 1999 Nov;121(3):947–56. PMID: 10557244; PMCID: PMC59459.
Yang cycle

Accession ID: Plant Reactome:R-GSU-1119624		 -
Methionine biosynthesis II

Accession ID: Plant Reactome:R-GSU-1119400		 -
Biotin biosynthesis II

Accession ID: Plant Reactome:R-GSU-1119610		 -
Secondary metabolism

Accession ID: Plant Reactome:R-GSU-2744344		 -
Metabolism and regulation

Accession ID: Plant Reactome:R-PTI-2744345		 -
Amino acid metabolism

Accession ID: Plant Reactome:R-PTI-2744343		 -
SMM cycle

Accession ID: Plant Reactome:R-PTI-1119349		 -
Cofactor biosyntheses

Accession ID: Plant Reactome:R-PTI-2867929		 -
Hormone signaling, transport, and metabolism

Accession ID: Plant Reactome:R-PTI-2744341		 -
Sterol biosynthesis

Accession ID: Plant Reactome:R-PTI-1119370		 -
Metabolism and regulation

Accession ID: Plant Reactome:R-GMA-2744345		 -
Amino acid metabolism

Accession ID: Plant Reactome:R-GMA-2744343		 -
SMM cycle

Accession ID: Plant Reactome:R-GMA-1119349		 -
Amine and polyamine biosynthesis

Accession ID: Plant Reactome:R-GMA-5096066
  • 10.1016/j.plaphy.2010.02.008
 Fuell C, Elliott KA, Hanfrey CC, Franceschetti M, Michael AJ. Polyamine biosynthetic diversity in plants and algae. Plant Physiol Biochem. 2010 Jul;48(7):513–20. doi: 10.1016/j.plaphy.2010.02.008. PMID: 20227886.
Spermidine biosynthesis

Accession ID: Plant Reactome:R-GMA-1119343		 -
Biotin biosynthesis II

Accession ID: Plant Reactome:R-GMA-1119610		 -
Ethene biosynthesis from methionine

Accession ID: Plant Reactome:R-GMA-1119334
  • 10.1111/nph.13209
 Voesenek LACJ, Bailey-Serres J. Flood adaptive traits and processes: an overview. New Phytol. 2015 Apr;206(1):57–73. doi: 10.1111/nph.13209. PMID: 25580769.