Pathways Knowlegdes

Biological pathway database

Pathway DOIs Note
biopterin metabolism

Accession ID: BioCyc:LEISH_PWY3IU-255
  • 10.1016/j.pt.2007.02.004
  • 10.1016/s0020-7519(01)00346-0
  • 10.1074/jbc.m206543200
 Opperdoes FR, Coombs GH. Metabolism of Leishmania: proven and predicted. Trends Parasitol. 2007 Apr;23(4):149–58. doi: 10.1016/j.pt.2007.02.004. PMID: 17320480.; Lye L, Cunningham ML, Beverley SM. Characterization of quinonoid-Dihydropteridine Reductase (QDPR) from the Lower Eukaryote Leishmania major. Journal of Biological Chemistry. 2002 Oct;277(41):38245–53. doi: 10.1074/jbc.m206543200.; Ouellette M, Drummelsmith J, El Fadili A, Kündig C, Richard D, Roy G. Pterin transport and metabolism in Leishmania and related trypanosomatid parasites. International Journal for Parasitology. 2002 Apr;32(4):385–98. doi: 10.1016/s0020-7519(01)00346-0.
tRNA charging pathway

Accession ID: BioCyc:LEISH_TRNA-CHARGING-PWY		 -
phenylalanine degradation

Accession ID: BioCyc:LEISH_PWY3IU-746
  • 10.1016/j.pt.2007.02.004
 Opperdoes FR, Coombs GH. Metabolism of Leishmania: proven and predicted. Trends Parasitol. 2007 Apr;23(4):149–58. doi: 10.1016/j.pt.2007.02.004. PMID: 17320480.
phenylalanine degradation II (anaerobic)

Accession ID: BioCyc:TRYPANO_ANAPHENOXI-PWY		 -
Inner Membrane Transport

Accession ID: PathBank:SMP0000808		 -
tRNA Charging

Accession ID: PathBank:SMP0000820		 -
tRNA Charging 2

Accession ID: PathBank:SMP0000824		 -
Phenylalanine Biosynthesis

Accession ID: PathBank:SMP0000827		 -
Phenylalanine Metabolism

Accession ID: PathBank:SMP0000938		 -
Catecholamine synthesis

Accession ID: WikiPathways:WP513		 - Pigeon D, Drissi-Daoudi R, Gros F, Thibault J. [Copurification of tyrosine hydroxylase from rat pheochromocytoma by protein kinase]. C R Acad Sci III. 1986;302(12):435–8. PMID: 2872947.
Phenylalanine biosynthesis

Accession ID: WikiPathways:WP194
  • 10.1007/s004380050643
 Urrestarazu A, Vissers S, Iraqui I, Grenson M. Phenylalanine- and tyrosine-auxotrophic mutants of Saccharomyces cerevisiae impaired in transamination. Molecular Genetics and Genomics. 1998 Jan;257(2):230–7. doi: 10.1007/s004380050643.
Biogenic amine synthesis

Accession ID: WikiPathways:WP522		 -
Biochemical pathways: part I

Accession ID: WikiPathways:WP3604
  • 10.1016/s0303-2647(98)00019-7
 Michal G. On representation of metabolic pathways. Biosystems. 1998 Jun;47(1-2):1–7. doi: 10.1016/s0303-2647(98)00019-7. PMID: 9715748.
Flavonoid biosynthesis

Accession ID: WikiPathways:WP1538		 -
AtMetExpress overview

Accession ID: WikiPathways:WP3622
  • 10.1039/c4np00072b
 Sumner LW, Lei Z, Nikolau BJ, Saito K. Modern plant metabolomics: advanced natural product gene discoveries, improved technologies, and future prospects. Nat Prod Rep. 2015 Feb;32(2):212–29. doi: 10.1039/c4np00072b. PMID: 25342293.
Biogenic amine synthesis

Accession ID: WikiPathways:WP154		 -
Amino acid metabolism

Accession ID: WikiPathways:WP662		 -
Glucose homeostasis

Accession ID: WikiPathways:WP661
  • 10.1038/msb.2008.50
 Shaham O, Wei R, Wang TJ, Ricciardi C, Lewis GD, Vasan RS, Carr SA, Thadhani R, Gerszten RE, Mootha VK. Metabolic profiling of the human response to a glucose challenge reveals distinct axes of insulin sensitivity. Molecular Systems Biology. 2008 Jan;4(1). doi: 10.1038/msb.2008.50.
Glucosinolate biosynthesis (from aromatic amino acid)

Accession ID: WikiPathways:WP4598
  • 10.1111/j.1365-313x.2004.02261.x
 Douglas Grubb C, Zipp BJ, Ludwig-Müller J, Masuno MN, Molinski TF, Abel S. Arabidopsis glucosyltransferase UGT74B1 functions in glucosinolate biosynthesis and auxin homeostasis. The Plant Journal. 2004 Oct 20;40(6):893–908. doi: 10.1111/j.1365-313x.2004.02261.x.
Biogenic amine synthesis

Accession ID: WikiPathways:WP125		 -