Loganin (BioCAD00000013446)

microbial natural products plant natural products marine natural products

Metabolite Card

Chinese Name: 马钱子苷
Formula: C17H26O10 (390.1526)
SMILES: 

[C@@]12([H])[C@@H](C)[C@H](C[C@]1([H])C(C(=O)OC)=CO[C@H]2O[C@H]1[C@H](O)[C@H]([C@H](O)[C@@H](CO)O1)O)O

Synonyms [en]

loganin; loganoside; 7-Hydroxy-6-desoxyverbenalin; Mussaenoside; H7WJ16Q93C; UNII-H7WJ16Q93C

Reviewed

Last reviewed on 2026-04-16.

Cite this Page

Loganin. 数据之源，洞见之始. SMRUCC genomics institute, a synthetic life researcher from China. https://biocad_registry.innovation.ac.cn/s/Loganin (retrieved 2026-08-21) (CAD Registry RN: BioCAD00000013446). Licensed under the Attribution-Noncommercial 4.0 International License (CC BY-NC 4.0).

Note

Loganin

Entity Information

DBLinks

Other DBLinks
  • CAS Registry Number: 18524-94-2
  • CAS Registry Number: 42830-26-2
  • CAS Registry Number: 64421-27-8
  • PubChem: 13848072
  • PubChem: 14488075
  • PubChem: 182423
  • PubChem: 354446
  • PubChem: 85095417
  • PubChem: 87691
  • PubChem: 91727262
  • ChEBI: ChEBI:15771
  • LipidMaps: LMPR0102070001
  • KEGG: C01433
  • BioCyc: LOGANIN
  • NCBI MeSH: loganin
  • Wikipedia: Loganin
  • RefMet: RM0135304
  • MoNA: FiehnLib000791
  • MoNA: PR309196
  • MoNA: RIKENPlaSMA007419
  • MoNA: RIKENPlaSMA007420
  • MoNA: RIKENPlaSMA007421
  • MoNA: RIKENPlaSMA007422
  • MoNA: RIKENPlaSMA007423
  • MoNA: RIKENPlaSMA007424
  • MoNA: RIKENPlaSMA007425
  • MoNA: RIKENPlaSMA007426
  • MoNA: RIKENPlaSMA007427
  • MoNA: RIKENPlaSMA007428
  • MoNA: RIKENPlaSMA007429
  • MoNA: RIKENPlaSMA007430
  • MoNA: RIKENPlaSMA007431
  • MoNA: TY000062
  • MoNA: TY000063
  • Metlin: METLIN_64938
  • Coconut NaturalProduct: CNP0179714.2
  • Coconut NaturalProduct: CNP0179714.4
  • Coconut NaturalProduct: CNP0179714.6
  • Coconut NaturalProduct: CNP0182212.1
  • Coconut NaturalProduct: CNP0182212.3
  • Coconut NaturalProduct: CNP0209137.1
  • Coconut NaturalProduct: CNP0209137.2
  • Coconut NaturalProduct: CNP0209137.3
  • Coconut NaturalProduct: CNP0210495.3
  • Coconut NaturalProduct: CNP0264781.2
  • Coconut NaturalProduct: CNP0264781.3
  • Coconut NaturalProduct: CNP0284741.1
  • Coconut NaturalProduct: CNP0305326.15
  • PMHub: MS000011981
  • PMHub: MS000033903
  • PMHub: MS000034937
  • PMHub: MS000085746
  • metaboanalyst: 827a83b3cc981fa22d0e5605a2ab34ee
  • metaboanalyst: bab33df9a7b6dd92fae7148915d9925a
  • HERB: HBIN033476
  • HERB: HBIN033479
  • HERB: HBIN036030
  • HERB: HBIN036031

Class / Ontology

Metabolic Network
ID EC Number Name
KEGG:R03554 2.1.1.50 S-adenosyl-L-methionine:loganate 11-O-methyltransferase
KEGG:R03555 1.14.19.62 loganin,[reduced NADPH---hemoprotein reductase]:oxygen oxidoreductase (ring-cleaving)
KEGG:R03556 1.14.14.85 7-deoxyloganin,[reduced NADPH---hemoprotein reductase]:oxygen oxidoreductase (7alpha-hydroxylating)
Rhea:RHEA:11453 1.14.14.85 7-deoxyloganin + reduced [NADPH—hemoprotein reductase] + O2 => loganin + oxidized [NADPH—hemoprotein reductase] + H2O + H+
Rhea:RHEA:11454 1.14.14.85 loganin + oxidized [NADPH—hemoprotein reductase] + H2O + H+ => 7-deoxyloganin + reduced [NADPH—hemoprotein reductase] + O2
Rhea:RHEA:11455 1.14.14.85 7-deoxyloganin + reduced [NADPH—hemoprotein reductase] + O2 <=> loganin + oxidized [NADPH—hemoprotein reductase] + H2O + H+
Rhea:RHEA:12509 2.1.1.50 loganate + S-adenosyl-L-methionine => loganin + S-adenosyl-L-homocysteine
Rhea:RHEA:12510 2.1.1.50 loganin + S-adenosyl-L-homocysteine => loganate + S-adenosyl-L-methionine
Rhea:RHEA:12511 2.1.1.50 loganate + S-adenosyl-L-methionine <=> loganin + S-adenosyl-L-homocysteine
Rhea:RHEA:20586 1.14.19.62 loganin + reduced [NADPH—hemoprotein reductase] + O2 => secologanin + oxidized [NADPH—hemoprotein reductase] + 2 H2O + H+
Rhea:RHEA:20587 1.14.19.62 secologanin + oxidized [NADPH—hemoprotein reductase] + 2 H2O + H+ => loganin + reduced [NADPH—hemoprotein reductase] + O2
Rhea:RHEA:20588 1.14.19.62 loganin + reduced [NADPH—hemoprotein reductase] + O2 <=> secologanin + oxidized [NADPH—hemoprotein reductase] + 2 H2O + H+
BioCyc:1.14.13.74-RXN 1.14.14.85 7-DEOXYLOGANIN + OXYGEN-MOLECULE + Red-NADPH-Hemoprotein-Reductases --> LOGANIN + WATER + Ox-NADPH-Hemoprotein-Reductases
BioCyc:RXN-15240 2.4.1.- loganetin glucosyltransferase
BioCyc:1.3.3.9-RXN 1.14.19.62 LOGANIN + OXYGEN-MOLECULE + Red-NADPH-Hemoprotein-Reductases --> SECOLOGANIN-CPD + 2 WATER + Ox-NADPH-Hemoprotein-Reductases
BioCyc:LOGANATE-O-METHYLTRANSFERASE-RXN 2.1.1.50 S-ADENOSYLMETHIONINE + LOGANATE --> ADENOSYL-HOMO-CYS + LOGANIN
Rhea:RHEA:11452 [11452] 7-deoxyloganin + reduced [NADPH--hemoprotein reductase] + O2 = loganin + oxidized [NADPH--hemoprotein reductase] + H2O + H(+)
Rhea:RHEA:12508 [12508] loganate + S-adenosyl-L-methionine = loganin + S-adenosyl-L-homocysteine
Rhea:RHEA:20585 [20585] loganin + reduced [NADPH--hemoprotein reductase] + O2 = secologanin + oxidized [NADPH--hemoprotein reductase] + 2 H2O + H(+)
View More
Mass Spectrum
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View All Mass Spectrum
Organism Source

Taxonomy Source

  1. Acidipropionibacterium acidipropionici [ncbi taxid: 1748]
  2. Adenaria floribunda [ncbi taxid: 312915]
  3. Alnus mandshurica [ncbi taxid: ]
  4. Alpinia kumatake [ncbi taxid: ]
  5. Alternaria scirpicola [ncbi taxid: 1342724]
  6. Arctanthemum arcticum [ncbi taxid: 99030]
  7. Argopsis megalospora [ncbi taxid: ]
  8. Aspidosperma pyrifolium [ncbi taxid: 141535]
  9. Astraeus hygrometricus [ncbi taxid: 150782]
  10. Astragalus centralpinus [ncbi taxid: ]
  11. Avicennia marina [ncbi taxid: 82927]
  12. Brandisia hancei [ncbi taxid: 255883]
  13. Caragana sinica [ncbi taxid: 403832]
  14. castilleja tenuiflora [ncbi taxid: 428897]
  15. Centaurea thessala [ncbi taxid: ]
  16. Cereus pachanoi [ncbi taxid: ]
  17. Cistanche deserticola [ncbi taxid: 161395]
  18. Corydalis rosea [ncbi taxid: ]
  19. cresentia alata [ncbi taxid: ]
  20. Dichothrix utahensis [ncbi taxid: ]
  21. Diospyros leucomelas [ncbi taxid: 1367309]
  22. Diplopappus fruticosus [ncbi taxid: ]
  23. Eugenia grandis [ncbi taxid: ]
  24. Genista tinctoria [ncbi taxid: 49825]
  25. Inga brenesii [ncbi taxid: ]
  26. Machaerocereus eruca [ncbi taxid: ]
  27. Marsupella emarginata [ncbi taxid: 253513]
  28. Mimosa hostilis [ncbi taxid: ]
  29. Myriogramme smithii [ncbi taxid: 158722]
  30. Nardosmia laevigata [ncbi taxid: ]
  31. Ophiorrhiza japonica [ncbi taxid: 367363]
  32. Orobanche rapum-genistae [ncbi taxid: 223129]
  33. Pedicularis ascendens Gaudin [ncbi taxid: ]
  34. Pedicularis aspleniifolia Willd. [ncbi taxid: ]
  35. Pedicularis foliosa L. [ncbi taxid: ]
  36. Pedicularis gyroflexa Vill. [ncbi taxid: ]
  37. Pedicularis kerneri Dalla Torre [ncbi taxid: ]
  38. Pedicularis oederi Hornem. [ncbi taxid: ]
  39. Pedicularis palustris [ncbi taxid: 462877]
  40. Pedicularis palustris L. [ncbi taxid: ]
  41. Pedicularis recutita L. [ncbi taxid: ]
  42. Pedicularis rostratocapitata Crantz [ncbi taxid: ]
  43. Pedicularis sylvatica L. [ncbi taxid: ]
  44. Pedicularis tuberosa L. [ncbi taxid: ]
  45. Pedicularis verticillata L. [ncbi taxid: ]
  46. Penstemon barbatus [ncbi taxid: 160364]
  47. Pinus pumilio [ncbi taxid: ]
  48. Plagiochila yokogurensis [ncbi taxid: ]
  49. Pyrenophora lolii [ncbi taxid: 139239]
  50. Salvia ballotiflora [ncbi taxid: 268890]
  51. Samuela carnerosana [ncbi taxid: ]
  52. Saprosma scortechinii [ncbi taxid: ]
  53. Scyphiphora hydrophyllacea [ncbi taxid: 86994]
  54. Solanum wendlandii [ncbi taxid: 45842]
  55. Stemonoporus affinis [ncbi taxid: 1034775]
  56. Stentor coeruleus [ncbi taxid: 5963]
  57. Swartzia langsdorffii [ncbi taxid: 450080]
  58. Swertia mussotii [ncbi taxid: 137888]
  59. Tanacetum cinerariifolium [ncbi taxid: 118510]
  60. Tetragonia tetragonioides [ncbi taxid: ]
  61. Verbascum pseudonobile [ncbi taxid: ]
  62. Verticillium intertextum [ncbi taxid: ]
  63. vitex mollis [ncbi taxid: ]
  64. Aragoa cundinamarcensis [ncbi taxid: 193563]
  65. Dioecrescis erythroclada [ncbi taxid: 1571008]
  66. Lippia alba [ncbi taxid: 320345]
  67. Mussaenda arvense [ncbi taxid: ]
  68. Mussaenda parviflora [ncbi taxid: 2100675]
  69. Mussaenda shikokiana [ncbi taxid: 296940]
  70. Pedicularis lapponica [ncbi taxid: 669771]
  71. Rothmannia globosa [ncbi taxid: 1237791]
  72. Schnabelia tetradonta [ncbi taxid: ]
  73. Tarenna gracilipes (HAY.) OHWI [ncbi taxid: ]
  74. Veronica bellidioides [ncbi taxid: 165329]
  75. Acacia aulacocarpa [ncbi taxid: 138511]
  76. Acritopappus confertus [ncbi taxid: 1744986]
  77. Adina racemosa [ncbi taxid: ]
  78. Anemone flaccida [ncbi taxid: ]
  79. Ardisia neriifolia [ncbi taxid: 2184479]
  80. Aspidosperma subincanum [ncbi taxid: 2743209]
  81. Brachylaena discolor var. rotundata [ncbi taxid: 1237404]
  82. Calycophyllum spruceanum [ncbi taxid: 271242]
  83. castilleja tenuiflora [ncbi taxid: 428897]
  84. Catharanthus roseus [ncbi taxid: 4058]
  85. Cornus officinalis [ncbi taxid: 16906]
  86. cresentia alata [ncbi taxid: ]
  87. Cryptocarya aschersoniana [ncbi taxid: 1345236]
  88. Dimocarpus fumatus [ncbi taxid: 1972651]
  89. Dipsacus asper [ncbi taxid: 516548]
  90. Dipsacus asperoides [ncbi taxid: 180066]
  91. Dipsacus laciniatus [ncbi taxid: 398307]
  92. Eucommia ulmoides [ncbi taxid: 4392]
  93. Eupatorium argentinum [ncbi taxid: ]
  94. Fagara ailanthoides [ncbi taxid: ]
  95. Gentiana crassicaulis [ncbi taxid: 308434]
  96. Gentiana dahurica [ncbi taxid: 225203]
  97. Gentiana loureirii [ncbi taxid: ]
  98. Gentiana macrophylla [ncbi taxid: 50765]
  99. Gentiana pedicellata [ncbi taxid: 1892689]
  100. Gentiana straminea [ncbi taxid: 50768]
  101. Guatteria boliviana [ncbi taxid: 343271]
  102. Jasminum hemsleyi Yamamoto [ncbi taxid: ]
  103. Juniperus brevifolia [ncbi taxid: 746017]
  104. Lamiophlomis rotata [ncbi taxid: ]
  105. Lamium album [ncbi taxid: 53159]
  106. Lippia graveolens [ncbi taxid: 1986359]
  107. Lonicera confusa [ncbi taxid: 370638]
  108. Lonicera fulvotomentosa [ncbi taxid: 643838]
  109. Lonicera hypoglauca [ncbi taxid: 638626]
  110. Lonicera japonica [ncbi taxid: 105884]
  111. Lonicera japonica Thunb. [ncbi taxid: ]
  112. Lonicera macranthoides [ncbi taxid: 638627]
  113. Lonicera quinquelocularis [ncbi taxid: 566153]
  114. Maesopsis eminii [ncbi taxid: 106689]
  115. Melicope lasioneura [ncbi taxid: 1226091]
  116. Menyanthes trifoliata [ncbi taxid: 28525]
  117. Neolentinus lepideus [ncbi taxid: 38799]
  118. Neonauclea sessilifolia [ncbi taxid: ]
  119. Nyctanthes Arbor [ncbi taxid: ]
  120. Nyctanthes arbor-tristis L. [ncbi taxid: ]
  121. Ophiorrhiza liukiuensis [ncbi taxid: 489897]
  122. Osmanthus austrocaledonicus (Vieill.) Knobl. [ncbi taxid: ]
  123. Patrinia villosa [ncbi taxid: 183944]
  124. Penstemon barbatus [ncbi taxid: 160364]
  125. Peritassa compta [ncbi taxid: ]
  126. Phlomoides rotata [ncbi taxid: 572115]
  127. Picconia excelsa (Aiton) DC. [ncbi taxid: ]
  128. Pithecollobium dulce [ncbi taxid: ]
  129. Porthetria dispar [ncbi taxid: ]
  130. Portulaca okinawensis [ncbi taxid: 1342349]
  131. Psiadia dentata [ncbi taxid: 1225829]
  132. Pterocephalus hookeri [ncbi taxid: ]
  133. Pulicaria uliginosa [ncbi taxid: ]
  134. Rheedia acuminata [ncbi taxid: ]
  135. Scutellaria lateriflora [ncbi taxid: 233893]
  136. Sinoadina racemosa [ncbi taxid: 170185]
  137. Stephania viridiflavens [ncbi taxid: 1501474]
  138. Streptomyces nitrosporeus [ncbi taxid: 28894]
  139. Strychnos axillaris [ncbi taxid: 1037789]
  140. Strychnos ignatii [ncbi taxid: 1037790]
  141. Strychnos lucida [ncbi taxid: 403120]
  142. Strychnos Nux [ncbi taxid: ]
  143. Strychnos nux-blanda [ncbi taxid: 1037791]
  144. Strychnos nux-vomica [ncbi taxid: 28545]
  145. Strychnos parvifolia [ncbi taxid: 1040913]
  146. Strychnos spinosa [ncbi taxid: 99302]
  147. Symphyocladia latiuscula [ncbi taxid: 396806]
  148. Torulopsis magnoliae [ncbi taxid: ]
  149. Trypetheliopsis boninensis [ncbi taxid: ]
  150. Uncaria cordata [ncbi taxid: 1382054]
  151. vitex mollis [ncbi taxid: ]
  152. Xenia puertogalerae [ncbi taxid: 1572435]
  153. Catharanthus roseus [ncbi taxid: 4058]
  154. Cornus officinalis [ncbi taxid: 16906]
  155. Dipsacus asperoides [ncbi taxid: 180066]
  156. Lonicera japonica [ncbi taxid: 105884]
  157. Menyanthes trifoliata [ncbi taxid: 28525]
  158. Patrinia villosa [ncbi taxid: 183944]
  159. Strychnos ignatii [ncbi taxid: 1037790]
  160. Strychnos nux-vomica [ncbi taxid: 28545]
  161. Lonicera japonica [ncbi taxid: 105884]
  162. Gentiana verna [ncbi taxid: 38855]
  163. Erodium malacoides [ncbi taxid: 337389]
  164. Montana elegans [ncbi taxid: ]
  165. Dysidea sp. [ncbi taxid: 3151546]
  166. Dysidea sp. [ncbi taxid: 3151546]
  167. Plexaura homomalla [ncbi taxid: 47982]

Pathway Synthetic

pathway id name
BioCyc:META_PWY-5290 secologanin and strictosidine biosynthesis
Plant Reactome:R-OSA-1119438 Secologanin and strictosidine biosynthesis
Plant Reactome:R-OSA-2744345 Metabolism and regulation
Plant Reactome:R-OSA-2744344 Secondary metabolism
View All Pathways