Deoxyuridine (BioCAD00000009762)
blood cerebrospinal fluid (csf) feces urine bladder bone marrow fibroblasts intestine leukocyte neuron pancreas placenta prostate skeletal muscle testis plant natural products marine natural products
Metabolite Card
Chinese Name: 脱氧尿苷
Formula: C9H12N2O5 (228.0746)
SMILES:
OC[C@H]1O[C@H](C[C@@H]1O)N1C=CC(=O)NC1=O
Synonyms [en]
deoxyuridine; 2'-DEOXYURIDINE; 2-Deoxyuridine; Desoxyuridine; 2'-Desoxyuridine; Deoxyribose uracil
Last reviewed on 2026-04-16.
Cite this Page
Deoxyuridine. 数据之源,洞见之始. SMRUCC genomics institute, a synthetic life researcher from China.
https://biocad_registry.innovation.ac.cn/s/Deoxyuridine
(retrieved
2026-08-20) (CAD Registry RN: BioCAD00000009762). Licensed
under the Attribution-Noncommercial 4.0 International License (CC BY-NC 4.0).
Note
Deoxyuridine, also known as dU, belongs to the class of organic compounds known as pyrimidine 2'-deoxyribonucleosides. Pyrimidine 2'-deoxyribonucleosides are compounds consisting of a pyrimidine linked to a ribose which lacks a hydroxyl group at position 2. It is similar in chemical structure to uridine, but without the 2'-hydroxyl group. Deoxyuridine exists in all living organisms, ranging from bacteria to humans. Within humans, deoxyuridine participates in a number of enzymatic reactions. In particular, deoxyuridine can be biosynthesized from deoxycytidine through its interaction with the enzyme cytidine deaminase. In addition, deoxyuridine can be converted into uracil and deoxyribose 1-phosphate through its interaction with the enzyme thymidine phosphorylase. Deoxyuridine is considered to be an antimetabolite that is converted into deoxyuridine triphosphate during DNA synthesis. Laboratory suppression of deoxyuridine is used to diagnose megaloblastic anemia due to vitamin B12 and folate deficiencies. In humans, deoxyuridine is involved in the metabolic disorder called UMP synthase deficiency (orotic aciduria). Outside of the human body, deoxyuridine has been detected, but not quantified in, several different foods, such as lichee, highbush blueberries, agaves, macadamia nut (M. tetraphylla), and red bell peppers. This could make deoxyuridine a potential biomarker for the consumption of these foods.
DBLinks
- CAS Registry Number: 951-78-0
- PubChem CID: 13712
- ChEBI: 16450
- HMDB: HMDB0000012
- LipidMaps:
- KEGG: C00526
- BioCyc: DEOXYURIDINE
- NCBI MeSH: Deoxyuridine
- Wikipedia: Deoxyuridine
Other DBLinks
- CAS Registry Number: 105891-89-2
- CAS Registry Number: 169527-96-2
- CAS Registry Number: 20649-53-0
- CAS Registry Number: 4713-68-2
- CAS Registry Number: 87018-26-6
- CAS Registry Number: 90685-35-1
- CAS Registry Number: 951-78-0
- PubChem: 135829
- PubChem: 13712
- PubChem: 640
- ChEBI: ChEBI:16450
- HMDB: HMDB0000012
- KEGG: C00526
- BioCyc: DEOXYURIDINE
- NCBI MeSH: Deoxyuridine
- Wikipedia: Deoxyuridine
- DrugBank: DB02256
- RefMet: RM0138920
- MoNA: BAF_UVA_POS001053
- MoNA: BAF_UVA_POS001054
- MoNA: BAF_UVA_POS001055
- MoNA: BAF_UVA_POS001056
- MoNA: BAF_UVA_POS001059
- MoNA: Bruker_HCD_library000532
- MoNA: Bruker_HCD_library000533
- MoNA: Bruker_HCD_library000534
- MoNA: CCMSLIB00000578180
- MoNA: CCMSLIB00005464415
- MoNA: CCMSLIB00005464476
- MoNA: CCMSLIB00005720676
- MoNA: EMBL-MCF_spec37825
- MoNA: EMBL_MCF_2_0_HRMS_Library000398
- MoNA: EMBL_MCF_2_0_HRMS_Library000399
- MoNA: EMBL_MCF_2_0_HRMS_Library000400
- MoNA: FiehnHILIC000046
- MoNA: FiehnHILIC000918
- MoNA: FiehnHILIC001614
- MoNA: FiehnHILIC002450
- MoNA: FiehnLib000969
- MoNA: FiehnLib000970
- MoNA: HMDB0000012_c_ms_1975
- MoNA: HMDB0000012_c_ms_1990
- MoNA: HMDB0000012_ms_ms_19
- MoNA: HMDB0000012_ms_ms_20
- MoNA: HMDB0000012_ms_ms_21
- MoNA: MoNA001772
- MoNA: MoNA001774
- MoNA: MoNA001776
- MoNA: MoNA016868
- MoNA: MoNA024158
- MoNA: MoNA024164
- MoNA: MoNA031991
- MoNA: MoNA031993
- MoNA: MoNA031994
- MoNA: MoNA033901
- MoNA: MoNA033902
- MoNA: MoNA033903
- MoNA: MoNA037120
- MoNA: MoNA037824
- MoNA: OUF00030
- MoNA: OUF00031
- MoNA: PS063301
- MoNA: PS063302
- MoNA: PS063303
- MoNA: PS063307
- MoNA: VF-NPL-LTQ000142
- MoNA: VF-NPL-QEHF000325
- MoNA: VF-NPL-QEHF000326
- MoNA: VF-NPL-QEHF000327
- MoNA: VF-NPL-QEHF000328
- MoNA: VF-NPL-QEHF000329
- MoNA: VF-NPL-QEHF000330
- MoNA: VF-NPL-QTOF007406
- MoNA: VF-NPL-QTOF007407
- MoNA: VF-NPL-QTOF007408
- Metlin: METLIN_91
- Coconut NaturalProduct: CNP0023623.0
- Coconut NaturalProduct: CNP0025530.0
- Coconut NaturalProduct: CNP0053520.1
- Coconut NaturalProduct: CNP0053520.2
- Coconut NaturalProduct: CNP0070701.1
- Coconut NaturalProduct: CNP0070701.2
- Coconut NaturalProduct: CNP0104726.0
- Coconut NaturalProduct: CNP0121829.0
- Coconut NaturalProduct: CNP0144511.0
- Coconut NaturalProduct: CNP0149340.1
- Coconut NaturalProduct: CNP0262597.0
- Coconut NaturalProduct: CNP0298080.0
- Coconut NaturalProduct: CNP0301830.1
- Coconut NaturalProduct: CNP0363563.1
- Coconut NaturalProduct: CNP0363563.2
- Coconut NaturalProduct: CNP0447543.1
- Coconut NaturalProduct: CNP0447543.2
- PMHub: MS000000124
- PMHub: MS000061036
- metaboanalyst: 04c7f3473dbdcaf8e856e536a0627d22
- metaboanalyst: 573a0d6825110f9c740eec2f1dc7b41f
- metaboanalyst: 592ca43e326e01a62a255eaea5aebf76
- metaboanalyst: 704ba631eeb5bc51e6afc29b411f360f
- metaboanalyst: 951e5d7ceb9cc7f293e594ddf4eafa0e
- HERB: HBIN019238
- HERB: HBIN024565
Class / Ontology
- WishartLab ClassyFire: [Pyrimidine 2'-deoxyribonucleosides] Pyrimidine 2'-deoxyribonucleosides
- RefMet: [Pyrimidine deoxyribonucleosides] Pyrimidine deoxyribonucleosides
- ChEBI: [CHEBI:16450] 2'-deoxyuridine
- Coconut NaturalProduct: [pteridine alkaloids] pteridine alkaloids
- Coconut NaturalProduct: [Pyrimidine nucleos(t)ides] Pyrimidine nucleos(t)ides
- Coconut NaturalProduct: [Peptide alkaloids] Peptide alkaloids
- Coconut NaturalProduct: [Naphthoquinones] Naphthoquinones
- Coconut NaturalProduct: [Simple diketopiperazine alkaloids] Simple diketopiperazine alkaloids
- Coconut NaturalProduct: [Phenazine alkaloids] Phenazine alkaloids
| ID | EC Number | Name |
|---|---|---|
| KEGG:R01879 | 1.14.11.3 | 2-deoxyuridine,2-oxoglutarate:oxygen oxidoreductase (2'-hydroxylating) |
| KEGG:R02099 | 2.7.1.21 | ATP:deoxyuridine 5'-phosphotransferase |
| KEGG:R02102 | 3.1.3.5 | 2'-deoxyuridine 5'-monophosphate phosphohydrolase |
| KEGG:R02484 | 2.4.2.2 | deoxyuridine:orthophosphate 2-deoxy-D-ribosyltransferase; |
| KEGG:R02485 | 3.5.4.5 | deoxycytidine aminohydrolase |
| KEGG:R02486 | 1.14.11.10 | 2-deoxyuridine,2-oxoglutarate:oxygen oxidoreductase (1'-hydroxylating) |
| BioCyc:CYTIDEAM-RXN | 3.5.4.5 | PROTON + WATER + DEOXYCYTIDINE --> DEOXYURIDINE + AMMONIUM |
| BioCyc:DURIDKI-RXN | 2.7.1.145 | DEOXYURIDINE + ATP --> PROTON + DUMP + ADP |
| BioCyc:URA-PHOSPH-RXN | 2.4.2.3 | DEOXYURIDINE + Pi --> DEOXY-D-RIBOSE-1-PHOSPHATE + URACIL |
| BioCyc:TRANS-RXN-108F | deoxyuridine:proton symport | |
| BioCyc:RXN-14523 | 3.1.3.34 | CPD-15393 + WATER --> DEOXYURIDINE + Pi |
| BioCyc:RXN-14143 | 3.1.3.89 | DUMP + WATER --> DEOXYURIDINE + Pi |
| Rhea:RHEA:13434 | 3.5.4.5 | 2'-deoxycytidine + H2O + H+ => 2'-deoxyuridine + NH4+ |
| Rhea:RHEA:13435 | 3.5.4.5 | 2'-deoxyuridine + NH4+ => 2'-deoxycytidine + H2O + H+ |
| Rhea:RHEA:13436 | 3.5.4.5 | 2'-deoxycytidine + H2O + H+ <=> 2'-deoxyuridine + NH4+ |
| Rhea:RHEA:21077 | 1.14.11.3 | 2'-deoxyuridine + 2-oxoglutarate + O2 => uridine + succinate + CO2 |
| Rhea:RHEA:21078 | 1.14.11.3 | uridine + succinate + CO2 => 2'-deoxyuridine + 2-oxoglutarate + O2 |
| Rhea:RHEA:21079 | 1.14.11.3 | 2'-deoxyuridine + 2-oxoglutarate + O2 <=> uridine + succinate + CO2 |
| Rhea:RHEA:22825 | 2.4.2.2 | 2'-deoxyuridine + phosphate => 2-deoxy-α-D-ribose 1-phosphate + uracil |
| Rhea:RHEA:22826 | 2.4.2.2 | 2-deoxy-α-D-ribose 1-phosphate + uracil => 2'-deoxyuridine + phosphate |
Taxonomy Source
- Stahlianthus campanulatus [ncbi taxid: 1256179]
- Biemna ehrenbergi [ncbi taxid: 1820598]
- Escherichia coli [ncbi taxid: 562]
- Phakellia mauritiana [ncbi taxid: ]
- Spongia sp. [ncbi taxid: ]
- Streptomyces YIM 56130 [ncbi taxid: ]
- Streptomyces DGC1 [ncbi taxid: ]
Pathway Synthetic
| pathway id | name |
|---|---|
| BioCyc:META_PWY-7181 | pyrimidine deoxyribonucleosides degradation |
| BioCyc:ECO_PWY-7181 | pyrimidine deoxyribonucleosides degradation |
| BioCyc:ECO_PWY0-181 | salvage pathways of pyrimidine deoxyribonucleotides |
| BioCyc:SHIGELLA_PWY0-1298 | superpathway of pyrimidine deoxyribonucleosides degradation |
| BioCyc:MTBH37RV_PWY-7199 | pyrimidine deoxyribonucleosides salvage |
| BioCyc:MTBH37RV_PWY-7181 | pyrimidine deoxyribonucleosides degradation |
| BioCyc:MTBCDC1551_PWY0-1298 | superpathway of pyrimidine deoxyribonucleosides degradation |
| BioCyc:ECOO157_PWY0-1298 | superpathway of pyrimidine deoxyribonucleosides degradation |
| BioCyc:ECOL199310_PWY-7200 | superpathway of pyrimidine deoxyribonucleoside salvage |
| BioCyc:ANTHRA_PWY0-1298 | superpathway of pyrimidine deoxyribonucleosides degradation |
| BioCyc:ANTHRA_PWY-7199 | pyrimidine deoxyribonucleosides salvage |
| BioCyc:ANTHRA_PWY-7200 | superpathway of pyrimidine deoxyribonucleoside salvage |
| BioCyc:ANTHRA_PWY-7181 | pyrimidine deoxyribonucleosides degradation |
| BioCyc:AGRO_PWY0-1298 | superpathway of pyrimidine deoxyribonucleosides degradation |
| BioCyc:AGRO_PWY-7199 | pyrimidine deoxyribonucleosides salvage |
| BioCyc:AURANTIMONAS_PWY0-1298 | superpathway of pyrimidine deoxyribonucleosides degradation |
| BioCyc:MOUSE_DRIBOPMET-PWY | (deoxy)ribose phosphate degradation |
| BioCyc:SMAN_PWY0-181 | salvage pathways of pyrimidine deoxyribonucleotides |
| BioCyc:SCO_DRIBOPMET-PWY | (deoxy)ribose phosphate degradation |
| BioCyc:ECOL316407_PWY0-181 | salvage pathways of pyrimidine deoxyribonucleotides |