Metabolite Card

Chinese Name: 脱氧尿苷
Formula: C9H12N2O5 (228.0746)
SMILES:

OC[C@H]1O[C@H](C[C@@H]1O)N1C=CC(=O)NC1=O

Synonyms [en]

deoxyuridine; 2'-DEOXYURIDINE; 2-Deoxyuridine; Desoxyuridine; 2'-Desoxyuridine; Deoxyribose uracil

Reviewed

Last reviewed on 2026-04-16.

Cite this Page

Deoxyuridine. 数据之源,洞见之始. SMRUCC genomics institute, a synthetic life researcher from China. https://biocad_registry.innovation.ac.cn/s/Deoxyuridine (retrieved 2026-08-20) (CAD Registry RN: BioCAD00000009762). Licensed under the Attribution-Noncommercial 4.0 International License (CC BY-NC 4.0).

Note

Deoxyuridine, also known as dU, belongs to the class of organic compounds known as pyrimidine 2'-deoxyribonucleosides. Pyrimidine 2'-deoxyribonucleosides are compounds consisting of a pyrimidine linked to a ribose which lacks a hydroxyl group at position 2. It is similar in chemical structure to uridine, but without the 2'-hydroxyl group. Deoxyuridine exists in all living organisms, ranging from bacteria to humans. Within humans, deoxyuridine participates in a number of enzymatic reactions. In particular, deoxyuridine can be biosynthesized from deoxycytidine through its interaction with the enzyme cytidine deaminase. In addition, deoxyuridine can be converted into uracil and deoxyribose 1-phosphate through its interaction with the enzyme thymidine phosphorylase. Deoxyuridine is considered to be an antimetabolite that is converted into deoxyuridine triphosphate during DNA synthesis. Laboratory suppression of deoxyuridine is used to diagnose megaloblastic anemia due to vitamin B12 and folate deficiencies. In humans, deoxyuridine is involved in the metabolic disorder called UMP synthase deficiency (orotic aciduria). Outside of the human body, deoxyuridine has been detected, but not quantified in, several different foods, such as lichee, highbush blueberries, agaves, macadamia nut (M. tetraphylla), and red bell peppers. This could make deoxyuridine a potential biomarker for the consumption of these foods.

Entity Information

DBLinks

Other DBLinks
  • CAS Registry Number: 105891-89-2
  • CAS Registry Number: 169527-96-2
  • CAS Registry Number: 20649-53-0
  • CAS Registry Number: 4713-68-2
  • CAS Registry Number: 87018-26-6
  • CAS Registry Number: 90685-35-1
  • CAS Registry Number: 951-78-0
  • PubChem: 135829
  • PubChem: 13712
  • PubChem: 640
  • ChEBI: ChEBI:16450
  • HMDB: HMDB0000012
  • KEGG: C00526
  • BioCyc: DEOXYURIDINE
  • NCBI MeSH: Deoxyuridine
  • Wikipedia: Deoxyuridine
  • DrugBank: DB02256
  • RefMet: RM0138920
  • MoNA: BAF_UVA_POS001053
  • MoNA: BAF_UVA_POS001054
  • MoNA: BAF_UVA_POS001055
  • MoNA: BAF_UVA_POS001056
  • MoNA: BAF_UVA_POS001059
  • MoNA: Bruker_HCD_library000532
  • MoNA: Bruker_HCD_library000533
  • MoNA: Bruker_HCD_library000534
  • MoNA: CCMSLIB00000578180
  • MoNA: CCMSLIB00005464415
  • MoNA: CCMSLIB00005464476
  • MoNA: CCMSLIB00005720676
  • MoNA: EMBL-MCF_spec37825
  • MoNA: EMBL_MCF_2_0_HRMS_Library000398
  • MoNA: EMBL_MCF_2_0_HRMS_Library000399
  • MoNA: EMBL_MCF_2_0_HRMS_Library000400
  • MoNA: FiehnHILIC000046
  • MoNA: FiehnHILIC000918
  • MoNA: FiehnHILIC001614
  • MoNA: FiehnHILIC002450
  • MoNA: FiehnLib000969
  • MoNA: FiehnLib000970
  • MoNA: HMDB0000012_c_ms_1975
  • MoNA: HMDB0000012_c_ms_1990
  • MoNA: HMDB0000012_ms_ms_19
  • MoNA: HMDB0000012_ms_ms_20
  • MoNA: HMDB0000012_ms_ms_21
  • MoNA: MoNA001772
  • MoNA: MoNA001774
  • MoNA: MoNA001776
  • MoNA: MoNA016868
  • MoNA: MoNA024158
  • MoNA: MoNA024164
  • MoNA: MoNA031991
  • MoNA: MoNA031993
  • MoNA: MoNA031994
  • MoNA: MoNA033901
  • MoNA: MoNA033902
  • MoNA: MoNA033903
  • MoNA: MoNA037120
  • MoNA: MoNA037824
  • MoNA: OUF00030
  • MoNA: OUF00031
  • MoNA: PS063301
  • MoNA: PS063302
  • MoNA: PS063303
  • MoNA: PS063307
  • MoNA: VF-NPL-LTQ000142
  • MoNA: VF-NPL-QEHF000325
  • MoNA: VF-NPL-QEHF000326
  • MoNA: VF-NPL-QEHF000327
  • MoNA: VF-NPL-QEHF000328
  • MoNA: VF-NPL-QEHF000329
  • MoNA: VF-NPL-QEHF000330
  • MoNA: VF-NPL-QTOF007406
  • MoNA: VF-NPL-QTOF007407
  • MoNA: VF-NPL-QTOF007408
  • Metlin: METLIN_91
  • Coconut NaturalProduct: CNP0023623.0
  • Coconut NaturalProduct: CNP0025530.0
  • Coconut NaturalProduct: CNP0053520.1
  • Coconut NaturalProduct: CNP0053520.2
  • Coconut NaturalProduct: CNP0070701.1
  • Coconut NaturalProduct: CNP0070701.2
  • Coconut NaturalProduct: CNP0104726.0
  • Coconut NaturalProduct: CNP0121829.0
  • Coconut NaturalProduct: CNP0144511.0
  • Coconut NaturalProduct: CNP0149340.1
  • Coconut NaturalProduct: CNP0262597.0
  • Coconut NaturalProduct: CNP0298080.0
  • Coconut NaturalProduct: CNP0301830.1
  • Coconut NaturalProduct: CNP0363563.1
  • Coconut NaturalProduct: CNP0363563.2
  • Coconut NaturalProduct: CNP0447543.1
  • Coconut NaturalProduct: CNP0447543.2
  • PMHub: MS000000124
  • PMHub: MS000061036
  • metaboanalyst: 04c7f3473dbdcaf8e856e536a0627d22
  • metaboanalyst: 573a0d6825110f9c740eec2f1dc7b41f
  • metaboanalyst: 592ca43e326e01a62a255eaea5aebf76
  • metaboanalyst: 704ba631eeb5bc51e6afc29b411f360f
  • metaboanalyst: 951e5d7ceb9cc7f293e594ddf4eafa0e
  • HERB: HBIN019238
  • HERB: HBIN024565

Class / Ontology

Metabolic Network
ID EC Number Name
KEGG:R01879 1.14.11.3 2-deoxyuridine,2-oxoglutarate:oxygen oxidoreductase (2'-hydroxylating)
KEGG:R02099 2.7.1.21 ATP:deoxyuridine 5'-phosphotransferase
KEGG:R02102 3.1.3.5 2'-deoxyuridine 5'-monophosphate phosphohydrolase
KEGG:R02484 2.4.2.2 deoxyuridine:orthophosphate 2-deoxy-D-ribosyltransferase;
KEGG:R02485 3.5.4.5 deoxycytidine aminohydrolase
KEGG:R02486 1.14.11.10 2-deoxyuridine,2-oxoglutarate:oxygen oxidoreductase (1'-hydroxylating)
BioCyc:CYTIDEAM-RXN 3.5.4.5 PROTON + WATER + DEOXYCYTIDINE --> DEOXYURIDINE + AMMONIUM
BioCyc:DURIDKI-RXN 2.7.1.145 DEOXYURIDINE + ATP --> PROTON + DUMP + ADP
BioCyc:URA-PHOSPH-RXN 2.4.2.3 DEOXYURIDINE + Pi --> DEOXY-D-RIBOSE-1-PHOSPHATE + URACIL
BioCyc:TRANS-RXN-108F deoxyuridine:proton symport
BioCyc:RXN-14523 3.1.3.34 CPD-15393 + WATER --> DEOXYURIDINE + Pi
BioCyc:RXN-14143 3.1.3.89 DUMP + WATER --> DEOXYURIDINE + Pi
Rhea:RHEA:13434 3.5.4.5 2'-deoxycytidine + H2O + H+ => 2'-deoxyuridine + NH4+
Rhea:RHEA:13435 3.5.4.5 2'-deoxyuridine + NH4+ => 2'-deoxycytidine + H2O + H+
Rhea:RHEA:13436 3.5.4.5 2'-deoxycytidine + H2O + H+ <=> 2'-deoxyuridine + NH4+
Rhea:RHEA:21077 1.14.11.3 2'-deoxyuridine + 2-oxoglutarate + O2 => uridine + succinate + CO2
Rhea:RHEA:21078 1.14.11.3 uridine + succinate + CO2 => 2'-deoxyuridine + 2-oxoglutarate + O2
Rhea:RHEA:21079 1.14.11.3 2'-deoxyuridine + 2-oxoglutarate + O2 <=> uridine + succinate + CO2
Rhea:RHEA:22825 2.4.2.2 2'-deoxyuridine + phosphate => 2-deoxy-α-D-ribose 1-phosphate + uracil
Rhea:RHEA:22826 2.4.2.2 2-deoxy-α-D-ribose 1-phosphate + uracil => 2'-deoxyuridine + phosphate
View More
Mass Spectrum
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View All Mass Spectrum
Organism Source

Taxonomy Source

  1. Stahlianthus campanulatus [ncbi taxid: 1256179]
  2. Biemna ehrenbergi [ncbi taxid: 1820598]
  3. Escherichia coli [ncbi taxid: 562]
  4. Phakellia mauritiana [ncbi taxid: ]
  5. Spongia sp. [ncbi taxid: ]
  6. Streptomyces YIM 56130 [ncbi taxid: ]
  7. Streptomyces DGC1 [ncbi taxid: ]

Pathway Synthetic

pathway id name
BioCyc:META_PWY-7181 pyrimidine deoxyribonucleosides degradation
BioCyc:ECO_PWY-7181 pyrimidine deoxyribonucleosides degradation
BioCyc:ECO_PWY0-181 salvage pathways of pyrimidine deoxyribonucleotides
BioCyc:SHIGELLA_PWY0-1298 superpathway of pyrimidine deoxyribonucleosides degradation
BioCyc:MTBH37RV_PWY-7199 pyrimidine deoxyribonucleosides salvage
BioCyc:MTBH37RV_PWY-7181 pyrimidine deoxyribonucleosides degradation
BioCyc:MTBCDC1551_PWY0-1298 superpathway of pyrimidine deoxyribonucleosides degradation
BioCyc:ECOO157_PWY0-1298 superpathway of pyrimidine deoxyribonucleosides degradation
BioCyc:ECOL199310_PWY-7200 superpathway of pyrimidine deoxyribonucleoside salvage
BioCyc:ANTHRA_PWY0-1298 superpathway of pyrimidine deoxyribonucleosides degradation
BioCyc:ANTHRA_PWY-7199 pyrimidine deoxyribonucleosides salvage
BioCyc:ANTHRA_PWY-7200 superpathway of pyrimidine deoxyribonucleoside salvage
BioCyc:ANTHRA_PWY-7181 pyrimidine deoxyribonucleosides degradation
BioCyc:AGRO_PWY0-1298 superpathway of pyrimidine deoxyribonucleosides degradation
BioCyc:AGRO_PWY-7199 pyrimidine deoxyribonucleosides salvage
BioCyc:AURANTIMONAS_PWY0-1298 superpathway of pyrimidine deoxyribonucleosides degradation
BioCyc:MOUSE_DRIBOPMET-PWY (deoxy)ribose phosphate degradation
BioCyc:SMAN_PWY0-181 salvage pathways of pyrimidine deoxyribonucleotides
BioCyc:SCO_DRIBOPMET-PWY (deoxy)ribose phosphate degradation
BioCyc:ECOL316407_PWY0-181 salvage pathways of pyrimidine deoxyribonucleotides
View All Pathways